View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8385_low_8 (Length: 489)
Name: NF8385_low_8
Description: NF8385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8385_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 18 - 470
Target Start/End: Original strand, 42925495 - 42925947
Alignment:
| Q |
18 |
agacgacaaacccaaaatgaaatcatcaacattcaatcacccaagaaagggctcaccagctccgaaacccacccaacatccggatcctcaacaacttcac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42925495 |
agacgacaaacccaaaatgaaatcatcaacattcaatcacccaagaaagggctcaccagctccgaaacccacccaacatccggatcctcaacaacttcac |
42925594 |
T |
|
| Q |
118 |
ccgaacctgaacctgaacccatacccgatccattaaaagagttctctttgctcagtttctcaaacatcttcacccttatatctcttccagattccaccct |
217 |
Q |
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|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42925595 |
ccaaacctgaacctgaacccatgcccgatccattaaaagagttctctttgctcagtttctcaaacatcttcacccttatatctcttccagattccaccct |
42925694 |
T |
|
| Q |
218 |
ctccatcacaggctcttcctcacaactctgatcccaaagatcaaaatgattaaccctaccacgactcggcacctgtgtaggtgtcgatggtaggctacag |
317 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42925695 |
ctccatcacaggctcttcttcacaactctgatcccaaagatcaaaatgattaaccctaccacgactcggcacctgtgtaggtgtcgatggtaggctacag |
42925794 |
T |
|
| Q |
318 |
aatccgggtcggatcacgggtcctctcggagatccgaatctaggagaacccatttgaacattccatgaagaaggtaatgacttcatggtgccaagttgta |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42925795 |
aatccgggtcggatcacgggtcctctcggagatccgaatctaggagaacccatttgaacattccatgaagaaggtaatgacttcatggtaccaagttgta |
42925894 |
T |
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| Q |
418 |
agtttctcagagaagccaccatttcatttacagagctagaacccacagatctt |
470 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42925895 |
agtttctcagagaagccaccatttcattcacagagctagaacccacagatctt |
42925947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 262
Target Start/End: Complemental strand, 34340891 - 34340791
Alignment:
| Q |
162 |
tctttgctcagtttctcaaacatcttcacccttatatctcttccagattccaccctctccatcacaggctcttcctcacaactctgatcccaaagatcaa |
261 |
Q |
| |
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|||||||| | ||||||||||||||| |||| |||||||||||| || || |||||||| | |||||| || ||||||||||||||||| | ||||| |
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| T |
34340891 |
tctttgcttaatttctcaaacatcttagccctaatatctcttccactctcaactctctccattataggctcctcttcacaactctgatcccataaatcaa |
34340792 |
T |
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| Q |
262 |
a |
262 |
Q |
| |
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| T |
34340791 |
a |
34340791 |
T |
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