View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8386_high_10 (Length: 215)
Name: NF8386_high_10
Description: NF8386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8386_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-103; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 32912042 - 32911850
Alignment:
| Q |
1 |
catagtatataatgaattagaaggaaacctgtgaacatagagatcatatggttttcccttgagtacaagcttcttaatgtatggatcaactccatcagca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32912042 |
catagtatataatgaattagaaggaaacctgtgaacatagagatcatatggttttcccttgagtacaagcttcttaatgtatggatcaactccatcagca |
32911943 |
T |
|
| Q |
101 |
gcttttggagcatttttagctgttttctttgacactgcatatgccatttgaactgatccacctccaagatccattactcccactgtttttgtg |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32911942 |
acttttggagcatttttagctgttttctttgacactgcatatgccatttgaactgatccacctccaagatccattactcccactgtttttgtg |
32911850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 25 - 201
Target Start/End: Complemental strand, 32924018 - 32923842
Alignment:
| Q |
25 |
aaacctgtgaacatagagatcatatggttttcccttgagtacaagcttcttaatgtatggatcaactccatcagcagcttttggagcatttttagctgtt |
124 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
32924018 |
aaacctatgaacatagagatcatatttttttcccttgagtacaagcttcttaatgtatggatcttctccatcagcaacttttggagcatttttagctgta |
32923919 |
T |
|
| Q |
125 |
ttctttgacactgcatatgccatttgaactgatccacctccaagatccattactcccactgtttttgtgaatttttt |
201 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32923918 |
tactttgacactgcatatgccatttgaactgatccacctccaagatccattactcccactgtttttgtgaatttttt |
32923842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 32935136 - 32934955
Alignment:
| Q |
14 |
gaattagaaggaaacctgtgaacatagagatcatatggttttcccttgagtacaagcttcttaatgtatggatcaactccatcagcagcttttggagcat |
113 |
Q |
| |
|
|||||||||| |||||| ||||||||||| |||||| | ||||||||||||||||||||||| || |||||||| ||||||| ||| |||||||||||| |
|
|
| T |
32935136 |
gaattagaagaaaacctatgaacatagaggtcatattgctttcccttgagtacaagcttctttatatatggatcctctccatctgcaacttttggagcat |
32935037 |
T |
|
| Q |
114 |
ttttagctgttttctttgacactgcatatgccatttgaactgatccacctccaagatccattactcccactgtttttgtgaa |
195 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
32935036 |
ttttagctgttttctttgacacagcatatgtcatttgaactgaaccacctccaaggtcaattactcccactgtttttgtgaa |
32934955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 171
Target Start/End: Complemental strand, 32942683 - 32942537
Alignment:
| Q |
25 |
aaacctgtgaacatagagatcatatggttttcccttgagtacaagcttcttaatgtatggatcaactccatcagcagcttttggagcatttttagctgtt |
124 |
Q |
| |
|
|||||||||||||||||| | |||| ||||| || ||||||| ||| || ||||||||||| |||| | || ||| |||||| ||||| ||| | |
|
|
| T |
32942683 |
aaacctgtgaacatagaggtaatatttctttcctttaagtacaatcttttttatgtatggatcctctccctgaggtacttgtggagctttttttgct-tg |
32942585 |
T |
|
| Q |
125 |
ttct-ttgacactgcatatgccatttgaactgatccacctccaagatc |
171 |
Q |
| |
|
|||| |||| ||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
32942584 |
ttctcttgagactgcatataccatttgaactgatccccctccaagatc |
32942537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 32900926 - 32900892
Alignment:
| Q |
137 |
gcatatgccatttgaactgatccacctccaagatc |
171 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32900926 |
gcatatgccatttgaacagatccacctccaagatc |
32900892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 25 - 201
Target Start/End: Complemental strand, 11824158 - 11823981
Alignment:
| Q |
25 |
aaacctgtgaacatagagatcatatggtttt-cccttgagtacaagcttcttaatgtatggatcaactccatcagcagcttttggagcatttttagctgt |
123 |
Q |
| |
|
|||||| |||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
11824158 |
aaacctatgaacatagagatcatattttttttcccttgagtacaagcttcttaatatatggatcatctccatcagcaacttttggagcatttttagctgt |
11824059 |
T |
|
| Q |
124 |
tttctttgacactgcatatgccatttgaactgatccacctccaagatccattactcccactgtttttgtgaatttttt |
201 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11824058 |
attccttgacactgcatatgccatttgaaccgatccacctccaagatccattactcccactgtttttgtgaatttttt |
11823981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University