View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8386_high_5 (Length: 317)
Name: NF8386_high_5
Description: NF8386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8386_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 55664067 - 55663752
Alignment:
| Q |
1 |
tttggagttcaaaaagaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaagttatataattttaattgtt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55664067 |
tttgaagttcaaaaagaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaagttatataattttaattgtt |
55663968 |
T |
|
| Q |
101 |
atttctggccctacttcatgctggcaacattgagagtttacttattaacttaccaaatttcgttgccattccaaggtacttggtgacccagggttgcatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55663967 |
atttctggccctacttcatgctggcaacattgaaagtttacgtattaacttaccaaatttcgttgccattccaaggtacttggtgacccagggttgcatt |
55663868 |
T |
|
| Q |
201 |
aaacctctgtgtgatttgcttgtttgccctgatccaacaattgttgctgtctgcttagaaggtcttgagaattttctggaggttggagaagcggagaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55663867 |
aaacctctgtgtgatttgcttgtttgccctgatccaacaattgttgctgtctgcttagaaggtcttgagaattttctggaggttggagaagcggagaaaa |
55663768 |
T |
|
| Q |
301 |
acttttgtaacaccgg |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
55663767 |
acttttgtaacaccgg |
55663752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 11 - 313
Target Start/End: Complemental strand, 54861248 - 54860950
Alignment:
| Q |
11 |
aaaaagaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaagttatataattttaattgttattt-ctggc |
109 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||| || |||||||| |||||||||||||| |||||||||| ||||||||||||||| ||||| |
|
|
| T |
54861248 |
aaaaagaagctgcatgggcactcactaatgctacatcaggtggtacccacgagcaaatcaagtaggtgaagttat----ttttaattgttattttctggc |
54861153 |
T |
|
| Q |
110 |
cctacttcatgctggcaacattgagagtttacttattaacttaccaaatttcgttgccattccaaggtacttggtgacccagggttgcattaaacctctg |
209 |
Q |
| |
|
|| |||||||||||||||||| ||||||||| |||||||||||||||| | |||| ||| ||||||||||||| | ||||||||||||||| |||||| |
|
|
| T |
54861152 |
tctgcttcatgctggcaacatt-agagtttacatattaacttaccaaatgttgttgttattacaaggtacttggttagccagggttgcattaagcctctg |
54861054 |
T |
|
| Q |
210 |
tgtgatttgcttgtttgccctgatccaacaattgttgctgtctgcttagaaggtcttgagaattttctggaggttggagaagcggagaaaaacttttgta |
309 |
Q |
| |
|
||||||||| | |||||||||||||||| ||||||| ||||||| ||||||||||||||||| ||||| |||||||||||| |||||||| |||| ||| |
|
|
| T |
54861053 |
tgtgatttgatggtttgccctgatccaagaattgttactgtctgtctagaaggtcttgagaatattctgaaggttggagaagtggagaaaagctttggta |
54860954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 11 - 313
Target Start/End: Complemental strand, 52983350 - 52983051
Alignment:
| Q |
11 |
aaaaagaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaagttatataattttaattgttatttc-tggc |
109 |
Q |
| |
|
|||||||||||||||||||| | | ||||||||| | | | ||||||| ||||||||||||||||||||| |||| ||||||||||||||| |||| |
|
|
| T |
52983350 |
aaaaagaagctgcatgggcactctctaatgctacgtttagtggtacccctgagcaaatcaagtatgtgaa----tatatttttaattgttattttatggc |
52983255 |
T |
|
| Q |
110 |
cctacttcatgctggcaacattgagagtttacttattaacttaccaaatttcgttgccattccaaggtacttggtgacccagggttgcattaaacctctg |
209 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||||||||||| ||||||| | |||| ||| ||||||||||||||| | | | ||||||||| |||||| |
|
|
| T |
52983254 |
tctgcttcatgctggcaactttgagagtttacttattaactcaccaaatgttgttgttattacaaggtacttggtgagctatgattgcattaagcctctg |
52983155 |
T |
|
| Q |
210 |
tgtgatttgcttgtttgccctgatccaacaattgttgctgtctgcttagaaggtcttgagaattttctggaggttggagaagcggagaaaaacttttgta |
309 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| || |||||| |||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
52983154 |
tgtgatttgcttgtttgccctgatccaaaaattattattgtctgtttagaatgtcttgagaatattctgaaggttggagaagcggagaaaaggttttgta |
52983055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 11 - 313
Target Start/End: Complemental strand, 55619470 - 55619174
Alignment:
| Q |
11 |
aaaaagaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaagttatataattttaattgttatttct-ggc |
109 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||| ||||| |||||||||||||||||||||||||||| |||||| ||||||| | ||| |
|
|
| T |
55619470 |
aaaaagaagctgcatgggcactccgtaatgctacatctgatggtactcatgagcaaatcaagtatgtgaagttat----ttttaacggttattttttggc |
55619375 |
T |
|
| Q |
110 |
cctacttcatgctggcaacattgagagtttacttattaacttaccaaatttcgttgccattccaaggtacttggtgacccagggttgcattaaacctctg |
209 |
Q |
| |
|
|| ||| || || | ||||||||||||| |||||| || || ||| | | || ||| ||||||||||||||| ||| ||||||||||| |||||| |
|
|
| T |
55619374 |
tctgctttatact---attattgagagtttacatattaaatttcccaatgttgctgttattgcaaggtacttggtgagccatggttgcattaagcctctg |
55619278 |
T |
|
| Q |
210 |
tgtgatttgcttgtttgccctgatccaacaattgttgctgtctgcttagaaggtcttgagaattttctggaggttggagaagcggagaaaaacttttgta |
309 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
55619277 |
tgtgatttgcttgtttgccctgatccaaaaattgtttctgtctgtttagatggtcttgagaattttctaaaggttggagaagcggagaaaagcttttgta |
55619178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 11 - 313
Target Start/End: Complemental strand, 55657820 - 55657524
Alignment:
| Q |
11 |
aaaaagaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaagttatataattttaattgttatttct-ggc |
109 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||| ||||| |||||||||||||||||||||||||||| |||||| ||||||| | ||| |
|
|
| T |
55657820 |
aaaaagaagctgcatgggcactccgtaatgctacatctgatggtactcatgagcaaatcaagtatgtgaagttat----ttttaacggttattttttggc |
55657725 |
T |
|
| Q |
110 |
cctacttcatgctggcaacattgagagtttacttattaacttaccaaatttcgttgccattccaaggtacttggtgacccagggttgcattaaacctctg |
209 |
Q |
| |
|
|| ||| || || | ||||||||||||| |||||| || || ||| | | || ||| ||||||||||||||| ||| ||||||||||| |||||| |
|
|
| T |
55657724 |
tctgctttatact---attattgagagtttacatattaaatttcccaatgttgctgttattgcaaggtacttggtgagccatggttgcattaagcctctg |
55657628 |
T |
|
| Q |
210 |
tgtgatttgcttgtttgccctgatccaacaattgttgctgtctgcttagaaggtcttgagaattttctggaggttggagaagcggagaaaaacttttgta |
309 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
55657627 |
tgtgatttgcttgtttgccctgatccaaaaattgtttctgtctgtttagatggtcttgagaattttctaaaggttggagaagcggagaaaagcttttgta |
55657528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 11 - 313
Target Start/End: Complemental strand, 55626774 - 55626478
Alignment:
| Q |
11 |
aaaaagaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaagttatataattttaattgttatttct-ggc |
109 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||||||| ||||| |||||||||||||||||||||||||||| |||||| ||||||| | ||| |
|
|
| T |
55626774 |
aaaaagaagctgcatgtgcactccgtaatgctacatctgatggtactcatgagcaaatcaagtatgtgaagttat----ttttaacggttattttttggc |
55626679 |
T |
|
| Q |
110 |
cctacttcatgctggcaacattgagagtttacttattaacttaccaaatttcgttgccattccaaggtacttggtgacccagggttgcattaaacctctg |
209 |
Q |
| |
|
|| ||| || || | ||||||||||||| |||||| || || ||| | | || ||| ||||||||||||||| ||| ||||||||||| |||||| |
|
|
| T |
55626678 |
tctgctttatact---attattgagagtttacatattaaatttcccaatgttgctgttattgcaaggtacttggtgagccatggttgcattaagcctctg |
55626582 |
T |
|
| Q |
210 |
tgtgatttgcttgtttgccctgatccaacaattgttgctgtctgcttagaaggtcttgagaattttctggaggttggagaagcggagaaaaacttttgta |
309 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
55626581 |
tgtgatttgcttgtttgccctgatccaaaaattgtttctgtctgtttagatggtcttgagaattttctaaaggttggagaagcggagaaaagcttttgta |
55626482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 292
Target Start/End: Original strand, 55636969 - 55637243
Alignment:
| Q |
12 |
aaaagaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaagttatataattttaattgttattt-ctggcc |
110 |
Q |
| |
|
||||||||||||||||||| | ||||||| ||||||||| |||||||||||||||||||||||||||||| ||| ||| |||| |||||| ||||| |
|
|
| T |
55636969 |
aaaagaagctgcatgggcactctttaatgttacatctggtggtacccatgagcaaatcaagtatgtgaagctat----tttaaatttttattttctggct |
55637064 |
T |
|
| Q |
111 |
ctacttcatgctggcaacattgagagtttacttattaacttaccaaatttcgttgccattccaaggtacttggtgacccagggttgcattaaacctctgt |
210 |
Q |
| |
|
|| || ||||||| ||||||||||||||| ||||||||| ||| || | |||| ||| |||||||||||| || ||| ||||||||||| ||||||| |
|
|
| T |
55637065 |
ct---tcgtgctggccacattgagagtttacgtattaacttgccatatgttgttgatattacaaggtacttggagagccaaggttgcattaagcctctgt |
55637161 |
T |
|
| Q |
211 |
gtgatttgcttgtttgccctgatccaacaattgttgctgtctgcttagaaggtcttgagaattttctggaggttggagaagc |
292 |
Q |
| |
|
|||||||||||| | || |||||||| ||||||| |||| || ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
55637162 |
gtgatttgcttgctatccatgatccaagaattgttactgtttgtctagaaggtcttgagaattttctgaaggttggagaagc |
55637243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 36 - 300
Target Start/End: Original strand, 54629986 - 54630247
Alignment:
| Q |
36 |
taatgctacatctggcggtacccatgagcaaatcaagtatgtgaagttatataattttaattgttatttc-tggccctacttcatgctggcaacattgag |
134 |
Q |
| |
|
||||| ||||||||| |||||||| ||||| |||||||| |||| ||||| ||||||||||||||| |||| || ||||||||||||||||||||| |
|
|
| T |
54629986 |
taatgttacatctggtggtacccacgagcatatcaagtaggtgatgttat----ttttaattgttattttatggcactgcttcatgctggcaacattgag |
54630081 |
T |
|
| Q |
135 |
agtttacttattaacttaccaaatttcgttgccattccaaggtacttggtgacccagggttgcattaaacctctgtgtgatttgcttgtttgccctgatc |
234 |
Q |
| |
|
||||| | |||||||| |||| | | | || ||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
54630082 |
agttttcatattaactaaccacacgttgctgttattacaaggtacttggtgagccagggttgcattaagcctctgtgtgatttgctagtttgccctgatc |
54630181 |
T |
|
| Q |
235 |
caacaattgttgctgtctgcttagaaggtcttgagaattttctggaggttggagaagcggagaaaa |
300 |
Q |
| |
|
||| ||| ||| |||| || |||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
54630182 |
caagaatagttactgtttgtctagaaggtcttgagaattttctaaaggttggagaagcagagaaaa |
54630247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 188 - 302
Target Start/End: Complemental strand, 3671346 - 3671232
Alignment:
| Q |
188 |
ccagggttgcattaaacctctgtgtgatttgcttgtttgccctgatccaacaattgttgctgtctgcttagaaggtcttgagaattttctggaggttgga |
287 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||| ||||||||| ||||||| ||||||| || || ||||||||||||||||| |||||||| |
|
|
| T |
3671346 |
ccagggttgcattaagcctctgtgtgatttgctcgtttgctctgatccaaaaattgttactgtctgtttgcaatgtcttgagaattttctgaaggttgga |
3671247 |
T |
|
| Q |
288 |
gaagcggagaaaaac |
302 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
3671246 |
gaagcggagaaaaac |
3671232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 3671414 - 3671355
Alignment:
| Q |
16 |
gaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtat |
75 |
Q |
| |
|
||||| ||||||||| | | |||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
3671414 |
gaagcagcatgggcactctctaatgctacatctggcagtacccatgagcaaatcgagtat |
3671355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 13403375 - 13403669
Alignment:
| Q |
11 |
aaaaagaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaagttatataattttaattgttatttct-ggc |
109 |
Q |
| |
|
|||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||| | ||| |
|
|
| T |
13403375 |
aaaaagaagctgcatgggcactctccaatgctacatctggcggtacccatgagcaaatcaagtatgtgaagtgat----ttttaatatttattttttggc |
13403470 |
T |
|
| Q |
110 |
cctacttcatgctggcaacattgagagtttacttattaacttaccaaatttcgttgccattccaaggtacttggtgacccagggttgcattaaacctctg |
209 |
Q |
| |
|
|| |||||||| || || ||| ||| |||| | ||||||||||||| | ||| || ||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
13403471 |
gctgcttcatgccggaaaaattaagattttaggtgataacttaccaaatatttttg---ttacaaggtacttggtgagccagggttgcattaagcctctg |
13403567 |
T |
|
| Q |
210 |
tgtgatttgcttgtttgccctgatccaacaattgttgctgtctgcttagaaggtcttgagaattttctggaggttggagaagcggagaaaaacttttgta |
309 |
Q |
| |
|
|||||| | ||||||||||| ||||||| ||||||| | ||||| |||||||||||||||||| ||||| || |||||||||| ||||||| |||| ||| |
|
|
| T |
13403568 |
tgtgatcttcttgtttgccccgatccaagaattgttaccgtctgtttagaaggtcttgagaatattctgaagattggagaagcagagaaaagctttggta |
13403667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 9891260 - 9891551
Alignment:
| Q |
16 |
gaagctgcatgggcattatttaatgctacatctggcggtacccatgagcaaatcaagtatgtgaagttat-ataatttt---aattgttattt-ctggcc |
110 |
Q |
| |
|
||||| ||||||||| | | |||||||||||||||| ||||||||||||||||| |||| |||| || | || |||| ||||||||||| ||||| |
|
|
| T |
9891260 |
gaagcagcatgggcactctctaatgctacatctggcagtacccatgagcaaatcgagtacgtgatttttttatttttttttaaattgttattttctggct |
9891359 |
T |
|
| Q |
111 |
ctacttcatgctggcaacattgagagtttacttattaacttaccaaatttcgttgccattccaaggtacttggtgacccagggttgcattaaacctctgt |
210 |
Q |
| |
|
| ||||||| |||| ||| ||| |||||| |||||||||||||||| | |||| || |||| || |||| || ||||||||||||||| ||||||| |
|
|
| T |
9891360 |
ttgcttcatgttggccgcatcgagtgtttacatattaacttaccaaatgttgttgttgttacaagttatttggcgagccagggttgcattaagcctctgt |
9891459 |
T |
|
| Q |
211 |
gtgatttgcttgtttgccctgatccaacaattgttgctgtctgcttagaaggtcttgagaattttctggaggttggagaagcggagaaaaac |
302 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||| ||||||| ||| || |||||||| |||||||| ||||||||||||||| ||||||| |
|
|
| T |
9891460 |
gtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgaggattttctgaaggttggagaagcggggaaaaac |
9891551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University