View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8386_high_6 (Length: 275)
Name: NF8386_high_6
Description: NF8386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8386_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 261
Target Start/End: Complemental strand, 42698719 - 42698465
Alignment:
| Q |
8 |
agctacgctcacggggactctcattctttcggttgattctatcatttgattattacagctgtccctatatcatcaatataaaaattacatacgtcctaat |
107 |
Q |
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| T |
42698719 |
agctacgctcacggggactctcattccttccgttgattctatcatttgattattacagctgtccctatatcatcaaaataaaaattacatacgtccttat |
42698620 |
T |
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| Q |
108 |
atgcactgtcttttatcgagctgaatagtaaacggcaggcaagtgaacaattggtggtattttaagaactctgaatggaatcctagtatgttaagcttaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42698619 |
atgcactgtcttttatcgagctgaatagtaaacggcaggcaagtgaacaattggtggtattttaagaactctgaatggaatcctagtatgttaagcttaa |
42698520 |
T |
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| Q |
208 |
catatcccagaacaccaagagcatatactaaaca-tcttcgaacagacaattatt |
261 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
42698519 |
catatcccagaacaccaagagcatatcctaaacattcttcgaacagacaattatt |
42698465 |
T |
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