View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8386_low_1 (Length: 538)
Name: NF8386_low_1
Description: NF8386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8386_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 14 - 518
Target Start/End: Complemental strand, 38618831 - 38618320
Alignment:
| Q |
14 |
cacacgaattgctgaccatacatgggtggtttgaagatgaaatgtgtaaatggcttatagctagtcatggctgcgccattggtctttgtactagtatcat |
113 |
Q |
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| T |
38618831 |
cacacgaattgctaaccatacatgggtggtttgaagatgaaatgtgtaaatggcttatagctagtcatggctgcgccattggtctttgtactagtatctt |
38618732 |
T |
|
| Q |
114 |
atccagcattattcattttagtattgttgctttctcctatatgacatttgtagaaatatttttccttaaaccttatctttgcctttgaatcgagagaggg |
213 |
Q |
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| T |
38618731 |
atccagcattattcattttagaattgttgctttctcctatatgacatttgtagaaatatttttccttaaaccttatctttgcctttgaatcgagagaggg |
38618632 |
T |
|
| Q |
214 |
gaatctacattgatcttaaaacattgagtacatgacatcttagttaagt------tttaaaacttcgtcttttaagaccaaaagaaaactttggggcttc |
307 |
Q |
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| T |
38618631 |
gaatctacattgatcttaaaacattgagcacatgacatcttagttaagtgttttgtttaaaacttcgtcttttaagaccaaaagaaaattttggggcttc |
38618532 |
T |
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| Q |
308 |
aatcttttaatatcattcattataatattgttgtttaaacaatattataag-nnnnnnnnataaaaattatctcattttatgtcatttttaacatcaata |
406 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38618531 |
aatcttttaataccattcattataatattgttgtttaaacaatattttaagtttttttttataaaaattatctcattttatgtcatttttaacatcaata |
38618432 |
T |
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| Q |
407 |
aaacattcattattgttttagaccgagtcaaacttaccaaaaaagaactttacaccaaaaaggtcatcaacacacggacatcactcctcttagagtaatc |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38618431 |
aaacattcattattgttttagaccgagtcaaacttaccaaaaaagaactttacaccaaaaagatcatcaacacacggacatcactcctcttagagtaatc |
38618332 |
T |
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| Q |
507 |
atcacttgatca |
518 |
Q |
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| T |
38618331 |
atcatttgatca |
38618320 |
T |
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