View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8386_low_11 (Length: 257)
Name: NF8386_low_11
Description: NF8386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8386_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 10 - 205
Target Start/End: Complemental strand, 23175651 - 23175455
Alignment:
| Q |
10 |
ataatactcaaataaatgcacatgcggagagaatgaatggtgagccatgattagttctccattaaaaaatttaacaacctatatataaatccacttgtgt |
109 |
Q |
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| T |
23175651 |
ataatactcaaataaatgcacatgcggagagaatgaatggtgagccatgattagttctcctttaaaaaatttaacaacctatatataaacccacttgtgt |
23175552 |
T |
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| Q |
110 |
tggtgtgatgttggttttagactctggagtgtgttcttctttaaggactcaagtacaa-tattcttgatgccaatttgaatggactagtttagccgt |
205 |
Q |
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| T |
23175551 |
tggtgtgatgttggtttcagactatggagtgtgttcttttttaaggactcaagtacaattattcttgatgccaatttgaatagactagtttagccgt |
23175455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 10 - 205
Target Start/End: Complemental strand, 23586908 - 23586712
Alignment:
| Q |
10 |
ataatactcaaataaatgcacatgcggagagaatgaatggtgagccatgattagttctccattaaaaaatttaacaacctatatataaatccacttgtgt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
23586908 |
ataatactcaaataaatgcacatgcggagagaatgaatggtgagccatgattagttctcctttaaaaaatttaacaacctatatataaacccacttgtgt |
23586809 |
T |
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| Q |
110 |
tggtgtgatgttggttttagactctggagtgtgttcttctttaaggactcaagtacaa-tattcttgatgccaatttgaatggactagtttagccgt |
205 |
Q |
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| T |
23586808 |
tggtgtgatgttggtttcagactatggagtgtgttcttttttaaggactcaagtacaattattcttgatgccaatttgaatagactagtttagccgt |
23586712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 23181662 - 23181506
Alignment:
| Q |
9 |
gataatactcaaataaatgcacatgcggagagaatgaatggtgagccatgattagttctccattaaaaaatttaacaacctatatataaatccacttgtg |
108 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||||| ||| ||||||| ||| |||| ||||||||||||||||||||| ||||| |
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| T |
23181662 |
gataatactcaaataaatgcacatgcggggagaaggaatggtgacccacaattagttttcctttaatttttttaacaacctatatataaattaacttgga |
23181563 |
T |
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| Q |
109 |
ttgg--tgtgatgttggttttagactctggagtgtgttcttctttaaggactcaagt |
163 |
Q |
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|||| |||||||||||||| ||||| |||| ||||||||||||||||| ||||||| |
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| T |
23181562 |
ttggtctgtgatgttggtttgagactatggaatgtgttcttctttaaggtctcaagt |
23181506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 23592919 - 23592763
Alignment:
| Q |
9 |
gataatactcaaataaatgcacatgcggagagaatgaatggtgagccatgattagttctccattaaaaaatttaacaacctatatataaatccacttgtg |
108 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||||| ||| ||||||| ||| |||| ||||||||||||||||||||| ||||| |
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| T |
23592919 |
gataatactcaaataaatgcacatgcggggagaaggaatggtgacccacaattagttttcctttaatttttttaacaacctatatataaattaacttgga |
23592820 |
T |
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| Q |
109 |
ttgg--tgtgatgttggttttagactctggagtgtgttcttctttaaggactcaagt |
163 |
Q |
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|||| |||||||||||||| ||||| |||| ||||||||||||||||| ||||||| |
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| T |
23592819 |
ttggtctgtgatgttggtttgagactatggaatgtgttcttctttaaggtctcaagt |
23592763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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