View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8386_low_15 (Length: 216)
Name: NF8386_low_15
Description: NF8386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8386_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 11 - 201
Target Start/End: Original strand, 37135334 - 37135524
Alignment:
| Q |
11 |
agcagagacaattgtggcatggccttatgtatattctagtgttcctcattaccctgtgtatgagataaagaacgaaccttcttgttccatcatgtgaatg |
110 |
Q |
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| T |
37135334 |
agcagaggcaattgtggcatggccttatgtatattctagtgttcctcattaccctgtgtatgagataaagaacgaaccttcttgttccatcatgtgaatg |
37135433 |
T |
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| Q |
111 |
tcatctagaatatgcatggtaaagaatgaaaacagaggaatacatatataggaaaataagcatatatactaaagggtacattttgtagtga |
201 |
Q |
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| T |
37135434 |
tcatctagaatatgcatggtaaataatgaaaacagaggaatacatatataggaaaataagcatatatactaaagggtacattttgtagtga |
37135524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 37119298 - 37119249
Alignment:
| Q |
62 |
ccctgtgtatgagataaagaacgaaccttcttgttccatcatgtgaatgt |
111 |
Q |
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| T |
37119298 |
ccctgtgtgtgagataagggacgacccttcttgttccatcatgtgaatgt |
37119249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 37130992 - 37130923
Alignment:
| Q |
87 |
ccttcttgttccatcatgtgaatgtcatctagaatatgcatggtaaagaatgaaaacagaggaatacata |
156 |
Q |
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| T |
37130992 |
ccttcatgttccatcatgtgaaagccatcaacaatatgtatactaaagaatgaaaacagagggatacata |
37130923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 11 - 201
Target Start/End: Original strand, 20269266 - 20269456
Alignment:
| Q |
11 |
agcagagacaattgtggcatggccttatgtatattctagtgttcctcattaccctgtgtatgagataaagaacgaaccttcttgttccatcatgtgaatg |
110 |
Q |
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| T |
20269266 |
agcagaggcaattgtggcatggccttgtgtatattctagtgttcctcattaccctgtgtatgagataaagaacgaaccttcttgttccatcatgtgaatg |
20269365 |
T |
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| Q |
111 |
tcatctagaatatgcatggtaaagaatgaaaacagaggaatacatatataggaaaataagcatatatactaaagggtacattttgtagtga |
201 |
Q |
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| T |
20269366 |
tcatctagaatatgcatggtaaagaatgaaaacagaggaatacatatataggaaaataagcatatatacttaagggtatattttgtagtga |
20269456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 20273550 - 20273511
Alignment:
| Q |
162 |
gaaaataagcatatatactaaagggtacattttgtagtga |
201 |
Q |
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| T |
20273550 |
gaaaataagcatatatactaaagggtgcattttgcagtga |
20273511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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