View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8386_low_2 (Length: 473)
Name: NF8386_low_2
Description: NF8386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8386_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 17 - 457
Target Start/End: Original strand, 30275541 - 30275979
Alignment:
| Q |
17 |
tgcaactcaagaggataagttcttaaaaataatttatgttcgttacaatttacaatctgctgtgtttagttattaagtagaaacgacgttcaacattaaa |
116 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30275541 |
tgcaacgcaagaggataagttcttaaaaataatttatgttcgttacaatttacaatctgctgtgtttagttattaagtagaaacgacgttcaacattaaa |
30275640 |
T |
|
| Q |
117 |
ttatagtatcacattagagattagaccaacataaatgtggtgtatcaactgttaaatgcttcttttataaagctaaacagaaaatcaaaacacatcagta |
216 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30275641 |
ttatagtatcacaatagagattagaccaacataaatgtggtgtatcaactgttaaatgcttcttttataaagctaaacagaaaatcaaaacacatcagta |
30275740 |
T |
|
| Q |
217 |
atgtttaataatgtatggtaattatgaacacacctgtaatagtgtcagaaccttccggccactagaagttagcagacaataatcaggttgttcggttgaa |
316 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30275741 |
atgtttaataatgtatggtaatt--gaacacacctgtaatagtgtcagaaccttccggccactagaagttagcagacaataatcaggttgttcggttgaa |
30275838 |
T |
|
| Q |
317 |
gacccagctccgccaaacactccagacacaaggtatttctctaaaatccaagaatcacttattgagaatataggaatcactttcttaaagtggtttatgt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30275839 |
gacccagctccgccaaacactccagacacaaggtatttctctaaaatccaagaatcacttattgagaatataggaatcactttcttaaagtggtttatgt |
30275938 |
T |
|
| Q |
417 |
gtgtattcaaaacctcttcaatgcaaggaaagagttgattt |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30275939 |
gtgtattcaaaacctcttcaatgcaaggaaagagttgattt |
30275979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 17 - 450
Target Start/End: Original strand, 7778852 - 7779282
Alignment:
| Q |
17 |
tgcaactcaagaggataagttcttaaaaataatttatgttcgttacaatttacaatctgctgtgtttagttattaagtagaaacgacgttcaacattaaa |
116 |
Q |
| |
|
|||||| |||||| ||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
7778852 |
tgcaacgcaagagtataaggtcttaaaaataatttatgttagttacaatttacaatctgttgtgtttagttgttaagtagaaacaacgttcaacattaag |
7778951 |
T |
|
| Q |
117 |
ttatagtatcacattagagattagaccaacataaatgtggtgtatcaactgttaaatgcttcttttataaagctaaacagaaaatcaaaacacatcagta |
216 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7778952 |
ttatagtatcagattagagattagaccgacataaatgcggtgtatcaactgttaaatgcttctttgataaagctaaacagaaaatcaaaacacatcagta |
7779051 |
T |
|
| Q |
217 |
atgtttaataatgtatggtaattatgaacacacctgtaatagtgtcagaaccttccggccactagaagttagcagacaataatcaggttgttcggttgaa |
316 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7779052 |
atgtttaataatatatggtaat--tgaacacacctgtaatagtgtcagaacgttctggccactagaagttagcagacaataatcaggttgttcttttgaa |
7779149 |
T |
|
| Q |
317 |
gacccagctccgccaaacactccagacacaaggtatttctctaaaatccaagaatcacttattgagaatataggaatcactttcttaaagtggtttatgt |
416 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7779150 |
gatccagctccgccaaacactccagacacaaggtatttctctaaaatccaagaatcacttactgagaatataggaatcactttcttaaagtggtttatgt |
7779249 |
T |
|
| Q |
417 |
gtgtattcaaaacctcttcaatgcaaggaaagag |
450 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
7779250 |
gtgtattcaaaa-ctcttcaatgcaaggaaagag |
7779282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 28843301 - 28843245
Alignment:
| Q |
156 |
gtgtatcaactgttaaatgcttcttttataaagctaaacagaaaatcaaaacacatc |
212 |
Q |
| |
|
|||||||||||||||| | | ||||||||||| ||||||| || || |||||||||| |
|
|
| T |
28843301 |
gtgtatcaactgttaagtacctcttttataaatctaaacataatattaaaacacatc |
28843245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University