View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8386_low_3 (Length: 339)
Name: NF8386_low_3
Description: NF8386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8386_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 42925252 - 42924934
Alignment:
| Q |
1 |
ttgtctccttggtgatgtagatattttaagttttttatgttctgtgattgtaggatccaaaatcaatgtcttcaattatgtaaattatatatgcagtgta |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42925252 |
ttgtctccttggtgatgtagatatttcaagttttttatgttctgtgattgtaggatccaaaatcaatgtcttcaattatgtaaattatatatgcaatgta |
42925153 |
T |
|
| Q |
101 |
tgcatatatatatttattaaagtaatggatttgtttcagttctactctttctgctaactcttggggtttaagccatattgtatgttttaattgtattata |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
42925152 |
tgcatatatat--ttattaaagtaatggatttgtttcaattctactctttctgctaactcttggggtttaagccatgttttatgttttaattgtattata |
42925055 |
T |
|
| Q |
201 |
atcttgaaaaagtaattattattttaatggaactctttatttgttttttgatactattataatccatgttgttaatattgtattgtatttgacaaaatgt |
300 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42925054 |
atcttgaaaaagtaattcttattttaatggaactcttgatttgttttttgatactattataatccatgttgttaatattgtattgtatttgacaaaatgt |
42924955 |
T |
|
| Q |
301 |
aattaacaatgttgttttctt |
321 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
42924954 |
aattaacaatgttgttttctt |
42924934 |
T |
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