View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8386_low_4 (Length: 335)
Name: NF8386_low_4
Description: NF8386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8386_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 12 - 318
Target Start/End: Complemental strand, 16961935 - 16961629
Alignment:
| Q |
12 |
aacctgtgtagtgtacttatttatccaactctatcttttttctccacttgaagaaataatggcaaaaccatttccacattcacaacacctactcctcttc |
111 |
Q |
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| T |
16961935 |
aacctgtgtagtgtacttatttatccaactctatcttttttctccacttgaagaaataatggcaaaaccatttccacattcacaacacctactcctcttc |
16961836 |
T |
|
| Q |
112 |
atcttcttcctttccaccattcatctctcacaacagttacaattttctcagtctcaaacactttacaaacttcaagaaattcttggctacccttcatcac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16961835 |
atcttcttcctttccaccattcatctctcacaacagttacaattttctcagtctcaaacactttacaaacttcaagaaattcttggctacccttcatcac |
16961736 |
T |
|
| Q |
212 |
taaaaaccttaagcagcaccacagatttctgcaacattgaacctactccatatttaacactagtgtgctatgaagaaaatgttacacagttgcatgttgt |
311 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16961735 |
taaaaacattaagcagcaccacagatttctgcaacattgaacctactccatatttaacactagtgtgctatgaagaaaatgttacacagttgcatgttgt |
16961636 |
T |
|
| Q |
312 |
tggaaac |
318 |
Q |
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||||||| |
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| T |
16961635 |
tggaaac |
16961629 |
T |
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