View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8386_low_5 (Length: 325)
Name: NF8386_low_5
Description: NF8386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8386_low_5 |
 | |
|
| [»] scaffold0411 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 309
Target Start/End: Complemental strand, 50805270 - 50804972
Alignment:
| Q |
11 |
tttggtgttttggtttgctgatagacacgacaagcttttataccagagcaaataaatgaagcatgctatgttgatatgaggctaacaaagatgtttttga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50805270 |
tttggtgttttggtttgctgatagacacgacaagcttttataccagagcaaataaatgaagcatgctatgttgatatgaggctaacaaagatgtttttga |
50805171 |
T |
|
| Q |
111 |
gagtctgagnnnnnnnccaaaagtagaatacgacgggcaacggttctcttacaaggtaacctttacgggttcatataacttaaacagttttatatttgaa |
210 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50805170 |
gagtctgagaaaaaaaccaaaagtagaatacgacgggcaacggttctcttacaaggtaacctttacgggttcatataacttaaacagttttatatttgaa |
50805071 |
T |
|
| Q |
211 |
tactcctttagcaaataacttcttcatctgttgtttgttttttgtctagcatgttctcattttcgtctacattattttaatggcaagatggttctacct |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50805070 |
tactcctttagcaaataacttcttcatctgttgtttgttttttgtctagcatgttctcattttcgtctacattattttaatggcaagatggttctacct |
50804972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 309
Target Start/End: Original strand, 50870607 - 50870905
Alignment:
| Q |
11 |
tttggtgttttggtttgctgatagacacgacaagcttttataccagagcaaataaatgaagcatgctatgttgatatgaggctaacaaagatgtttttga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50870607 |
tttggtgttttggtttgctgatagacacgacaagcttttataccagagcaaataaatgaagcatgctatgttgatatgaggctaacaaagatgtttttga |
50870706 |
T |
|
| Q |
111 |
gagtctgagnnnnnnnccaaaagtagaatacgacgggcaacggttctcttacaaggtaacctttacgggttcatataacttaaacagttttatatttgaa |
210 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50870707 |
gagtctgagaaaaaaaccaaaagtagaatacgacgggcaacggttctcttacaaggtaacctttacgggttcatataacttaaacagttttatatttgaa |
50870806 |
T |
|
| Q |
211 |
tactcctttagcaaataacttcttcatctgttgtttgttttttgtctagcatgttctcattttcgtctacattattttaatggcaagatggttctacct |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50870807 |
tactcctttagcaaataacttcttcatctgttgtttgttttttgtctagcatgttctcattttcgtctacattattttaatggcaagatggttctacct |
50870905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 11 - 309
Target Start/End: Original strand, 19056917 - 19057216
Alignment:
| Q |
11 |
tttggtgttttggtttgctgatagacacgacaagcttttataccagagcaaataaatgaagcatgctatgttgatatgaggctaacaaagatgtttttga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19056917 |
tttggtgttttggtttgctgatagacacgacaagcttttataccagagcaaataaatgaagcatgctatgttgatatgaggctaacaaagatgtttttga |
19057016 |
T |
|
| Q |
111 |
gagtctgagnnnnnnn-ccaaaagtagaatacgacgggcaacggttctcttacaaggtaacctttacgggttcatataacttaaacagttttatatttga |
209 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19057017 |
gagtctgagaaaaaaaaccaaaagtagaatacgacgggcaacggttctcttacaaggtatcctttacgggttcatatatcttaaacagttttatatttga |
19057116 |
T |
|
| Q |
210 |
atactcctttagcaaataacttcttcatctgttgtttgttttttgtctagcatgttctcattttcgtctacattattttaatggcaagatggttctacct |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19057117 |
atactcctttagcaaataacttcttcatctgttgtttgttttttgtctagcatgttctcattttcgtctacattattttaatggcaagatggttctacct |
19057216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 11 - 258
Target Start/End: Original strand, 40705536 - 40705780
Alignment:
| Q |
11 |
tttggtgttttggtttgctgatagacacgacaagcttttataccagagcaaataaatgaagcatgctatgttgatatga-ggctaacaaagatgtttttg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40705536 |
tttggtgttttggtttgctgatagacacgacaagcttttacaccagagcaaataaatgaagcatgctatgttgatatgagggctaacaaagatgtttttg |
40705635 |
T |
|
| Q |
110 |
agagtctgagnnnnnnnccaaaagtagaatacgacgggcaacggttctcttacaaggtaacctttacgggttcatataacttaaacagttttatatttga |
209 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||| | |
|
|
| T |
40705636 |
agagtctaaggaaaaatccaaaagtagaatacgacgggcaacggttctcttacaaggtaacttttacgggttcatatatctt-aacagttttatatttaa |
40705734 |
T |
|
| Q |
210 |
atactcctttagcaaataacttcttcatctgttgtttgttttttgtcta |
258 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
40705735 |
atactcctttagcaaataacttattcat---ttgtttgttttttgtcta |
40705780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0411 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: scaffold0411
Description:
Target: scaffold0411; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 11423 - 11181
Alignment:
| Q |
11 |
tttggtgttttggtttgctgatagacacgacaagcttttataccagagcaaataaatgaagcatgctatgttgatatga-ggctaacaaagatgtttttg |
109 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| || | | ||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
11423 |
tttggtgttttgatttgctgatagacacgacaagcttttacacaaaaccaaataaatgaagcatgctatgttgatctgagggctaacaaagatgtttttg |
11324 |
T |
|
| Q |
110 |
agagtctgagnnnnnnnccaaaagtagaatacgacgggcaacggttctcttacaaggtaacctttacgggttcatataacttaaacagttttatatttga |
209 |
Q |
| |
|
|||||||||| ||||||||||| |||||| || ||| || |||||||||||||||||||||||||||||||| ||| |||| |||||||||| | |
|
|
| T |
11323 |
agagtctgaggaaaaacccaaaagtagagtacgacaggaaacagtactcttacaaggtaacctttacgggttcatatatctt-aacaattttatatttaa |
11225 |
T |
|
| Q |
210 |
atactcctttagcaaataacttcttcatctgttgtttgtttttt |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11224 |
atactcctttagcaaataacttcttcatctgttgtttttttttt |
11181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University