View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8386_low_6 (Length: 324)
Name: NF8386_low_6
Description: NF8386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8386_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 53124616 - 53124905
Alignment:
| Q |
19 |
ttattactacaccatttatcaccaacgctaacactccacttcttcttcacccaactccattaacacccaacttcaattttatttaagcctaatttattta |
118 |
Q |
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| T |
53124616 |
ttattactacaccatttatcaccaacgctaacacttcacttcttcttcacccaactccattaacacccaacttcaattttatttaagcctaatttattta |
53124715 |
T |
|
| Q |
119 |
tttaccttgtagttccttcaaatgattttatcatctctttttcaatttca-nnnnnnnnnagaaaggggtaggtgggtattccatacaggatttgcaatt |
217 |
Q |
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| T |
53124716 |
tttaccttgtagttccttcaattgattttatcatctctttttcaatttcattttttttttagaaaggggtaggtgggtattccatacaggatttgcaatt |
53124815 |
T |
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| Q |
218 |
tctctattccaccgccatagcatccttaaaactaccacaatcgaaatcatcaagtaatagaacaaaagaagaagaattgatgtttaaaat |
307 |
Q |
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| T |
53124816 |
tctctattccaccgccatagcatccttaaaactaccacaatcgaaatcatcaagtaatagaacaaaagaagaagaattgatgtttaaaat |
53124905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 29 - 307
Target Start/End: Original strand, 5748770 - 5749048
Alignment:
| Q |
29 |
accatttatcaccaacgctaacactccacttcttcttcacccaactccattaacacccaacttcaattttatttaagcctaatttatttatttaccttgt |
128 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5748770 |
accatttatcatcaacgctaacactccacttcttcttcacccaactccattaacacccaacttcaattttatttaagcctaatttatttatttaccttgt |
5748869 |
T |
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| Q |
129 |
agttccttcaaatgattttatcatctctttttcaatttcannnnnnnnnagaaaggggtaggtgggtattccatacaggatttgcaatttctctattcca |
228 |
Q |
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| T |
5748870 |
agttccttcaattgattttatcatctctttttcaatttcatttttttttagaaaggggtaggtgggtattccatacaggatttgcaatttctctattcca |
5748969 |
T |
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| Q |
229 |
ccgccatagcatccttaaaactaccacaatcgaaatcatcaagtaatagaacaaaagaagaagaattgatgtttaaaat |
307 |
Q |
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| T |
5748970 |
ccgccatagcatccttaaaactaccacaatcgaaatcatcaagtaacagaacaaaagaagaaaaattgatgtttaaaat |
5749048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 38 - 307
Target Start/End: Complemental strand, 26317519 - 26317250
Alignment:
| Q |
38 |
caccaacgctaacactccacttcttcttcacccaactccattaacacccaacttcaattttatttaagcctaatttatttatttaccttgtagttccttc |
137 |
Q |
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| T |
26317519 |
caccaacgctaacactccacttcttctttacccaactccattaacacccaacttcaattttatttcagcctaatttatttatttaccttgtagttccttc |
26317420 |
T |
|
| Q |
138 |
aaatgattttatcatctctttttcaatttcannnnnnnnnagaaaggggtaggtgggtattccatacaggatttgcaatttctctattccaccgccatag |
237 |
Q |
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| T |
26317419 |
aattgattttatcatctctttttcaatttcatttttttttagaaaggggtaggtgggtattccatacaggatttgcaatttctctattccaccgccatag |
26317320 |
T |
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| Q |
238 |
catccttaaaactaccacaatcgaaatcatcaagtaatagaacaaaagaagaagaattgatgtttaaaat |
307 |
Q |
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| T |
26317319 |
catccttaaaactaccacaatcaaaatcatcaagtaatagaacaaaagaagaagaattgatgtttaaaat |
26317250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 29 - 307
Target Start/End: Complemental strand, 41585157 - 41584881
Alignment:
| Q |
29 |
accatttatcaccaacgctaacactccacttcttcttcacccaactccattaacacccaacttcaattttatttaagcctaatttatttatttaccttgt |
128 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41585157 |
accatttatcaccaacgctaacactccacttcttc---acccaactccattaacatccaacttaaattttatttaagcctaatttatttatttaccttgt |
41585061 |
T |
|
| Q |
129 |
agttccttcaaatgattttatcatctctttttcaatttcannnnnnnnn-agaaaggggtaggtgggtattccatacaggatttgcaatttctctattcc |
227 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41585060 |
agttccttcaattgattttatcatctctttttcaatttcattttttttttagaaaggggtaggtgggtattccatacaggatttgcaatttctctattcc |
41584961 |
T |
|
| Q |
228 |
accgccatagcatccttaaaactaccacaatcgaaatcatcaagtaatagaacaaaagaagaagaattgatgtttaaaat |
307 |
Q |
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| T |
41584960 |
accgccatagcatccttaaaactaccacaatcgaaatcatcaagtaacagaacaaaagaagaagaattgatgtttaaaat |
41584881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 53 - 231
Target Start/End: Original strand, 34716581 - 34716762
Alignment:
| Q |
53 |
tccacttcttcttcacccaactccattaacacccaactt-caattttatttaa-gcct--aatttatttatttaccttgtagttccttcaaatgatttta |
148 |
Q |
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||||||||||||||||||||||||||||| || |||||| ||||||||||||| |||| ||||||||||||||||||||||||| ||||| || |||| |
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| T |
34716581 |
tccacttcttcttcacccaactccattaaaacacaactttcaattttatttaaagcctttaatttatttatttaccttgtagttctttcaattggcttta |
34716680 |
T |
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| Q |
149 |
tcatctctttttcaatttcannnnnnnnnagaaaggggtaggtgggtattccatacaggatttgcaatttctctattccaccg |
231 |
Q |
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| |||||||||||||||||| |||||||||| ||||| |||||||||| ||||| ||||||||| | |||||||| |
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| T |
34716681 |
ttatctctttttcaatttca-attttttgagaaaggggttggtggatattccatactggattcgcaatttctattttccaccg |
34716762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 36846351 - 36846263
Alignment:
| Q |
82 |
cacccaacttcaattttatttaagcct--aatttatttatttaccttgtagttccttcaaatgattttatcatctctttttcaatttca |
168 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||| ||||||||| |||||||| |
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| T |
36846351 |
cacccaacttcaattttatttaagcctttaatttatttatttaccttgtagttccttcaattggctttattatctcttttccaatttca |
36846263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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