View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8387_high_1 (Length: 324)
Name: NF8387_high_1
Description: NF8387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8387_high_1 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 339559 - 339372
Alignment:
| Q |
1 |
tataaacaacctcttgctgtccattatggtttttaatgatatgttggcggtaccaatctattgatagaagttttctgataacgaaaccagctcctctgag |
100 |
Q |
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| T |
339559 |
tataaataacctcttgctgtccattatggtttttaatgatatgttggcggtaccaatctattgatagaagttttctgataacggaaccagctcctctgag |
339460 |
T |
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| Q |
101 |
gtccttaacagtttcaaagagaggaaccacccgaagcctatgttggacacatgtatgtttgatgttaaattcaaacattcaaatataa |
188 |
Q |
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| T |
339459 |
gtccttaacagtttcaaagagaggaaccacccgaagcctatgttggacacatgtatgtttgatgttaaattcaaacattcaaatataa |
339372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 194 - 317
Target Start/End: Complemental strand, 339092 - 338969
Alignment:
| Q |
194 |
aactttgatctaaaatttacaggcaaatatgtataaaggttacaggtaatatgcatgactcgcaattattccagttgccttattgaaaacttatatacac |
293 |
Q |
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| T |
339092 |
aactttgatctaaaatttacaggcaaatatgtataaaggttacaggtaatatgcatgactcgcaattattccagttgccttattgaaaacttatatacat |
338993 |
T |
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| Q |
294 |
attaagatacaatttttcatctca |
317 |
Q |
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| T |
338992 |
attaagatacaatttttgatctca |
338969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 42189538 - 42189645
Alignment:
| Q |
9 |
acctcttgctgtccattatggtttttaatgatatgttggcggtaccaatctattgatagaa-gttttctgataacgaaaccagctcctctgaggtcctta |
107 |
Q |
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|||||||| |||||||| ||||| ||||||| || | ||||||||| |||||||||| || |||| | |||||| ||||||||||||| |||||||| |
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| T |
42189538 |
acctcttgatgtccattgtggttcttaatgacgtgctcgcggtaccagtctattgataaaaagtttccggataactgaaccagctcctctcaggtccttc |
42189637 |
T |
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| Q |
108 |
acagtttc |
115 |
Q |
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| T |
42189638 |
acggtttc |
42189645 |
T |
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