View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8387_low_2 (Length: 321)

Name: NF8387_low_2
Description: NF8387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8387_low_2
NF8387_low_2
[»] chr1 (2 HSPs)
chr1 (10-307)||(7100063-7100360)
chr1 (10-307)||(7580886-7581183)
[»] chr5 (17 HSPs)
chr5 (10-308)||(17983540-17983838)
chr5 (39-307)||(30476046-30476314)
chr5 (57-308)||(30520791-30521042)
chr5 (57-308)||(30561131-30561382)
chr5 (37-253)||(30207191-30207407)
chr5 (39-272)||(17417795-17418028)
chr5 (39-307)||(30436484-30436752)
chr5 (37-251)||(30400743-30400957)
chr5 (37-253)||(29853980-29854196)
chr5 (37-240)||(30750315-30750518)
chr5 (39-237)||(30676525-30676723)
chr5 (37-253)||(29872843-29873059)
chr5 (68-217)||(30241638-30241787)
chr5 (68-232)||(30061072-30061236)
chr5 (39-237)||(30337762-30337960)
chr5 (94-221)||(30330433-30330559)
chr5 (39-256)||(30484072-30484289)
[»] chr4 (3 HSPs)
chr4 (38-308)||(13617265-13617537)
chr4 (39-307)||(52352630-52352898)
chr4 (37-127)||(20295929-20296019)
[»] chr7 (1 HSPs)
chr7 (37-256)||(26708001-26708220)
[»] chr3 (1 HSPs)
chr3 (68-307)||(25293114-25293353)


Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 10 - 307
Target Start/End: Original strand, 7100063 - 7100360
Alignment:
Q  10 cagagagaaccgacaaaggacggattgggcatgttcccgtgattgaggcaacatccatatcacgagtagacactaaaacggaagtacctttggatccaca 109  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7100063 cagagagaaccgacaaaggacgggttgggcatgttcccgtgattgaggcaacatccatatcacgagtagacactaaaacggaagtacctttggatccaca 7100162  T
Q  110 tgacaacaccgatttcaacttattccatttctcttggtttagtccgaattcaaattcttcatttttgttccacacatcatccaaaaccaacaaacatctt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7100163 tgacaacaccgatttcaacttattccatttctcttggtttagtccgaattcaaattcttcatttttgttccacacatcatccaaaaccaacaaacatctt 7100262  T
Q  210 gtaccttgcatcatttcttgcacttttctttgtattacatctaactccattgaatcacacttttgttttgtcatggattctataatggaacacaaaat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7100263 gtaccttgcatcatttcttgcacttttctttgtattacatctaactccattgaatcacacttttgttttgtcatggattctataatggaacacaaaat 7100360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 10 - 307
Target Start/End: Complemental strand, 7581183 - 7580886
Alignment:
Q  10 cagagagaaccgacaaaggacggattgggcatgttcccgtgattgaggcaacatccatatcacgagtagacactaaaacggaagtacctttggatccaca 109  Q
    |||||||||| ||||||| |||  ||| |||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||     
T  7581183 cagagagaactgacaaagaacgagttgagcatgttcccatgattgatgcaacctccatatcacgagtagacactaaaacggaagtacctttcgatccacc 7581084  T
Q  110 tgacaacaccgatttcaacttattccatttctcttggtttagtccgaattcaaattcttcatttttgttccacacatcatccaaaaccaacaaacatctt 209  Q
     |||||||| |||||||| |||||||||||||| |||| |||||| ||||||||||||| | ||||  |||| ||||| |||||||||| ||||| ||||    
T  7581083 agacaacacagatttcaatttattccatttctcatggtctagtccaaattcaaattcttgactttttatccaaacatcgtccaaaaccagcaaacgtctt 7580984  T
Q  210 gtaccttgcatcatttcttgcacttttctttgtattacatctaactccattgaatcacacttttgttttgtcatggattctataatggaacacaaaat 307  Q
     | ||||||| |||||||||||| ||||||||||||||||||||  |||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  7580983 tttccttgcaacatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggattctataatggaacacaaaat 7580886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 163; Significance: 5e-87; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 10 - 308
Target Start/End: Original strand, 17983540 - 17983838
Alignment:
Q  10 cagagagaaccgacaaaggacggattgggcatgttcccgtgattgaggcaacatccatatcacgagtagacactaaaacggaagtacctttggatccaca 109  Q
    |||||||||| |||| ||||||  |||| ||||||||| | ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  17983540 cagagagaactgacagaggacgagttggacatgttcccataattgaggcaacatccatgtcacgagtagacactaaaatggaagtacctttggatccaca 17983639  T
Q  110 tgacaacaccgatttcaacttattccatttctcttggtttagtccgaattcaaattcttcatttttgttccacacatcatccaaaaccaacaaacatctt 209  Q
     |||||||| || |||||| ||||||| |||| |||||||| ||||||||||||||||||| |||||||||||||||| || ||||||||||| ||||||    
T  17983640 agacaacacagacttcaacctattccacttcttttggtttaatccgaattcaaattcttcacttttgttccacacatcgtcgaaaaccaacaagcatctt 17983739  T
Q  210 gtaccttgcatcatttcttgcacttttctttgtattacatctaactccattgaatcacacttttgttttgtcatggattctataatggaacacaaaatt 308  Q
     ||| ||||| |||||||||||| |||||||||||||| |||||  | |||  |||| | ||||||| ||||||||||||||||| |||||||||||||    
T  17983740 ttacgttgcaacatttcttgcacctttctttgtattacctctaaacctatttcatcaaatttttgttctgtcatggattctataacggaacacaaaatt 17983838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 39 - 307
Target Start/End: Original strand, 30476046 - 30476314
Alignment:
Q  39 catgttcccgtgattgaggcaacatccatatcacgagtagacactaaaacggaagtacctttggatccacatgacaacaccgatttcaacttattccatt 138  Q
    ||||||||| |||||   ||||||||| |||||||||| || ||||||| |||||  ||||||||||||||||||||| | ||||||||||| |||||||    
T  30476046 catgttcccatgatttctgcaacatccttatcacgagtggaaactaaaatggaagatcctttggatccacatgacaacgcagatttcaacttgttccatt 30476145  T
Q  139 tctcttggtttagtccgaattcaaattcttcatttttgttccacacatcatccaaaaccaacaaacatcttgtaccttgcatcatttcttgcacttttct 238  Q
    | |||||| ||| ||| | ||| ||| ||| |||| || |||| |||||||||||||||| |||| ||||| |||||||||  | |||| |  |||||||    
T  30476146 tgtcttggcttaatcctagttccaatccttgatttctgctccatacatcatccaaaaccagcaaaaatcttttaccttgcaatagttctcgtgcttttct 30476245  T
Q  239 ttgtattacatctaactccattgaatcacacttttgttttgtcatggattctataatggaacacaaaat 307  Q
    ||||||||||||||| ||||  | |||| |||| | |||||| || |||||||||||||||||||||||    
T  30476246 ttgtattacatctaaatccaaggcatcaaacttgtcttttgtgatagattctataatggaacacaaaat 30476314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 57 - 308
Target Start/End: Complemental strand, 30521042 - 30520791
Alignment:
Q  57 gcaacatccatatcacgagtagacactaaaacggaagtacctttggatccacatgacaacaccgatttcaacttattccatttctcttggtttagtccga 156  Q
    ||||||||| |||||||||| || ||||||| ||| | |||||||||||||  ||||||||| ||||||||||||||||||||||||||| ||| ||| |    
T  30521042 gcaacatccttatcacgagtggagactaaaatggatgaacctttggatccagttgacaacacggatttcaacttattccatttctcttggcttaatccaa 30520943  T
Q  157 attcaaattcttcatttttgttccacacatcatccaaaaccaacaaacatcttgtaccttgcatcatttcttgcacttttctttgtattacatctaactc 256  Q
    |||| | ||||| |||| |||||||||||||||||||||| | |||| ||||| |||||| || || ||||||||||| || |||||| |||||||| ||    
T  30520942 attccagttcttgatttctgttccacacatcatccaaaacaagcaaatatcttttaccttccaacaattcttgcacttgtcgttgtataacatctaaatc 30520843  T
Q  257 cattgaatcacacttttgttttgtcatggattctataatggaacacaaaatt 308  Q
     |  | ||||||||||| | |||  |  ||||||||||| | ||||||||||    
T  30520842 taaggcatcacacttttctcttgaaaaagattctataatagtacacaaaatt 30520791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 57 - 308
Target Start/End: Complemental strand, 30561382 - 30561131
Alignment:
Q  57 gcaacatccatatcacgagtagacactaaaacggaagtacctttggatccacatgacaacaccgatttcaacttattccatttctcttggtttagtccga 156  Q
    ||||||||| |||||||||| || ||||||| ||| | |||||||||||||  ||||||||| ||||||||||||||||||||||||||| ||| ||| |    
T  30561382 gcaacatccttatcacgagtggagactaaaatggatgaacctttggatccagttgacaacacggatttcaacttattccatttctcttggcttaatccaa 30561283  T
Q  157 attcaaattcttcatttttgttccacacatcatccaaaaccaacaaacatcttgtaccttgcatcatttcttgcacttttctttgtattacatctaactc 256  Q
    |||| | ||||| |||| |||||||||||||||||||||| | |||| ||||| |||||| || || ||||||||||| || |||||| |||||||| ||    
T  30561282 attccagttcttgatttctgttccacacatcatccaaaacaagcaaatatcttttaccttccaacaattcttgcacttgtcgttgtataacatctaaatc 30561183  T
Q  257 cattgaatcacacttttgttttgtcatggattctataatggaacacaaaatt 308  Q
     |  | ||||||||||| | |||  |  ||||||||||| | ||||||||||    
T  30561182 taaggcatcacacttttctcttgaaaaagattctataatagtacacaaaatt 30561131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 37 - 253
Target Start/End: Original strand, 30207191 - 30207407
Alignment:
Q  37 ggcatgttcccgtgattgaggcaacatccatatcacgagtagacactaaaacggaagtacctttggatccacatgacaacaccgatttcaacttattcca 136  Q
    ||||||||||| |||| |  |||||| ||  ||||||||| |||||||||| |||| |||||||||||||||| || ||||| |||||||   |||||||    
T  30207191 ggcatgttcccatgatcgtcgcaacaacctcatcacgagtggacactaaaatggaactacctttggatccacacgataacactgatttcagtatattcca 30207290  T
Q  137 tttctcttggtttagtccgaattcaaattcttcatttttgttccacacatcatccaaaaccaacaaacatcttgtaccttgcatcatttcttgcactttt 236  Q
    |||||||||| ||| ||||||||| ||||  | |||||||||||||||||||||||||| || |||| || || ||||||||| || ||| ||||| |||    
T  30207291 tttctcttggcttaatccgaattccaattgctgatttttgttccacacatcatccaaaatcagcaaatatattttaccttgcagcaattcctgcaccttt 30207390  T
Q  237 ctttgtattacatctaa 253  Q
    |||||||||||||||||    
T  30207391 ctttgtattacatctaa 30207407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 39 - 272
Target Start/End: Complemental strand, 17418028 - 17417795
Alignment:
Q  39 catgttcccgtgattgaggcaacatccatatcacgagtagacactaaaacggaagtacctttggatccacatgacaacaccgatttcaacttattccatt 138  Q
    ||||||||| ||||||  |||||| ||  ||||||||| |||||||||| |||| ||||||||||||||||    ||||| ||||||||| |||||||||    
T  17418028 catgttcccatgattgccgcaacaacctcatcacgagtggacactaaaatggaactacctttggatccacacataaacactgatttcaacgtattccatt 17417929  T
Q  139 tctcttggtttagtccgaattcaaattcttcatttttgttccacacatcatccaaaaccaacaaacatcttgtaccttgcatcatttcttgcacttttct 238  Q
    |||||||| ||| ||||||| | |||| ||   |||||||||||||||| ||||||||||  ||| ||||| |||||| ||  | ||||| ||| |||||    
T  17417928 tctcttggcttaatccgaatgctaattgttgcattttgttccacacatcgtccaaaaccagaaaatatcttttacctttcaatagttctttcacctttct 17417829  T
Q  239 ttgtattacatctaactccattgaatcacacttt 272  Q
    | ||| ||||||||| ||||  | ||||||||||    
T  17417828 tagtaatacatctaaatccaaggcatcacacttt 17417795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 307
Target Start/End: Original strand, 30436484 - 30436752
Alignment:
Q  39 catgttcccgtgattgaggcaacatccatatcacgagtagacactaaaacggaagtacctttggatccacatgacaacaccgatttcaacttattccatt 138  Q
    ||||||||| ||||||  |||||||||  ||||||||| |||||||||| |||| ||||||| |||||||| ||||| || |||||||| | || ||||     
T  30436484 catgttcccatgattgttgcaacatcctcatcacgagtggacactaaaatggaactaccttttgatccacacgacaaaacagatttcaaatgatcccatc 30436583  T
Q  139 tctcttggtttagtccgaattcaaattcttcatttttgttccacacatcatccaaaaccaacaaacatcttgtaccttgcatcatttcttgcacttttct 238  Q
    | |||||  |||  || ||||| |||| ||||||||  ||||||||||||||||||| || |||| || || | ||||||| || | ||||||| |||||    
T  30436584 tatcttgtgttaacccaaattccaattgttcattttgattccacacatcatccaaaatcagcaaatatattttcccttgcaacaatccttgcacctttct 30436683  T
Q  239 ttgtattacatctaactccattgaatcacacttttgttttgtcatggattctataatggaacacaaaat 307  Q
    ||  ||||||||||| || |    | ||||||| | | |||| || ||||||||||| |||||||||||    
T  30436684 ttccattacatctaaatcaaagtcagcacacttctctcttgtgatagattctataatagaacacaaaat 30436752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 251
Target Start/End: Original strand, 30400743 - 30400957
Alignment:
Q  37 ggcatgttcccgtgattgaggcaacatccatatcacgagtagacactaaaacggaagtacctttggatccacatgacaacaccgatttcaacttattcca 136  Q
    ||||||||||| ||||||  |||||| |  ||||||| || |||||||||| |||| ||||||| |||||||| ||||| || ||||||||   ||||||    
T  30400743 ggcatgttcccatgattgttgcaacaactttatcacgggtggacactaaaatggaactaccttttgatccacacgacaaaacagatttcaaacgattcca 30400842  T
Q  137 tttctcttggtttagtccgaattcaaattcttcatttttgttccacacatcatccaaaaccaacaaacatcttgtaccttgcatcatttcttgcactttt 236  Q
    | | |||||  |||  ||  |||| |||| ||||||||  ||||||||||||||||||| || |||| || || | ||||||| || ||||||||| |||    
T  30400843 tctatcttgtgttaacccagattccaattgttcattttgattccacacatcatccaaaatcagcaaatatattctcccttgcaacaattcttgcaccttt 30400942  T
Q  237 ctttgtattacatct 251  Q
    |||||||||||||||    
T  30400943 ctttgtattacatct 30400957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 37 - 253
Target Start/End: Original strand, 29853980 - 29854196
Alignment:
Q  37 ggcatgttcccgtgattgaggcaacatccatatcacgagtagacactaaaacggaagtacctttggatccacatgacaacaccgatttcaacttattcca 136  Q
    ||||||||||| ||||||  ||||||    |||||||||| |||||||||| |||| ||||||| |||||||| |||||||| || ||||| | ||||||    
T  29853980 ggcatgttcccatgattgttgcaacaaatttatcacgagtggacactaaaatggaactaccttttgatccacacgacaacacagacttcaaatgattcca 29854079  T
Q  137 tttctcttggtttagtccgaattcaaattcttcatttttgttccacacatcatccaaaaccaacaaacatcttgtaccttgcatcatttcttgcactttt 236  Q
    ||| |||||  |||  ||  |||| |||| || |||||  |||||||||||||||||||||| |||| || || ||||||||| || |||||||||  ||    
T  29854080 tttatcttgtgttaacccatattccaattgttgattttgattccacacatcatccaaaaccagcaaatatattttaccttgcaacaattcttgcaccctt 29854179  T
Q  237 ctttgtattacatctaa 253  Q
    ||||  | |||||||||    
T  29854180 ctttccaatacatctaa 29854196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 240
Target Start/End: Original strand, 30750315 - 30750518
Alignment:
Q  37 ggcatgttcccgtgattgaggcaacatccatatcacgagtagacactaaaacggaagtacctttggatccacatgacaacaccgatttcaacttattcca 136  Q
    |||||||||| |||||||  |||||| |   |||||| || |||| ||||| |||| |||||||||||||||| |||||||| | |||||| || |||||    
T  30750315 ggcatgttcctgtgattgttgcaacaacttcatcacgggtggacaataaaatggaactacctttggatccacaagacaacacaggtttcaatttgttcca 30750414  T
Q  137 tttctcttggtttagtccgaattcaaattcttcatttttgttccacacatcatccaaaaccaacaaacatcttgtaccttgcatcatttcttgcactttt 236  Q
    ||||||| |  |||  ||  |||| |||| ||||||||  ||||| ||||||||||||||||||||| ||||| | ||||||| || | ||||||| |||    
T  30750415 tttctctcgtgttaaccctgattccaattgttcattttgattccatacatcatccaaaaccaacaaatatcttttcccttgcaacaatccttgcaccttt 30750514  T
Q  237 cttt 240  Q
    ||||    
T  30750515 cttt 30750518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 39 - 237
Target Start/End: Complemental strand, 30676723 - 30676525
Alignment:
Q  39 catgttcccgtgattgaggcaacatccatatcacgagtagacactaaaacggaagtacctttggatccacatgacaacaccgatttcaacttattccatt 138  Q
    ||||| ||| ||||||| |||||||||  ||||||||| |||||||||| |||| ||||||| |||||||| ||||| || ||||||||   |||||||     
T  30676723 catgtccccatgattgatgcaacatcctcatcacgagtggacactaaaatggaactacctttagatccacacgacaaaacagatttcaaacgattccatc 30676624  T
Q  139 tctcttggtttagtccgaattcaaattcttcatttttgttccacacatcatccaaaaccaacaaacatcttgtaccttgcatcatttcttgcacttttc 237  Q
    | |||||  |||  ||  |||| |||| ||||||||  |||||||||||||||||||||| |||| ||||| | ||||||| || | ||||||| ||||    
T  30676623 tatcttgtgttaacccagattccaattgttcattttgattccacacatcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttc 30676525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 37 - 253
Target Start/End: Original strand, 29872843 - 29873059
Alignment:
Q  37 ggcatgttcccgtgattgaggcaacatccatatcacgagtagacactaaaacggaagtacctttggatccacatgacaacaccgatttcaacttattcca 136  Q
    |||||||||||  |||||  |||||| |  ||||||| || |||||||||| |||| ||||||| |||||||| |||||||| || ||||| | ||||||    
T  29872843 ggcatgttcccacgattgttgcaacaactttatcacgggtggacactaaaatggaactaccttttgatccacacgacaacacagacttcaaatgattcca 29872942  T
Q  137 tttctcttggtttagtccgaattcaaattcttcatttttgttccacacatcatccaaaaccaacaaacatcttgtaccttgcatcatttcttgcactttt 236  Q
     || || ||  |||||||  |||| |||| ||   |||||||||||| |||||||||||| | |||| || || ||||||||| || ||||||||| |||    
T  29872943 cttatcatgtgttagtccagattccaattgttgggttttgttccacagatcatccaaaacgagcaaatattttttaccttgcagcacttcttgcaccttt 29873042  T
Q  237 ctttgtattacatctaa 253  Q
    ||||  |||||||||||    
T  29873043 ctttccattacatctaa 29873059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 68 - 217
Target Start/End: Complemental strand, 30241787 - 30241638
Alignment:
Q  68 atcacgagtagacactaaaacggaagtacctttggatccacatgacaacaccgatttcaacttattccatttctcttggtttagtccgaattcaaattct 167  Q
    ||||||||| || ||||||| |||| ||||||||||||||||||||||||| ||||||||  | |||||||||||| |  |||  ||  |||| |||| |    
T  30241787 atcacgagtggatactaaaatggaactacctttggatccacatgacaacacagatttcaatgtgttccatttctctcgtgttaaccctgattccaattgt 30241688  T
Q  168 tcatttttgttccacacatcatccaaaaccaacaaacatcttgtaccttg 217  Q
    |||||||  |||||||||||||||||||| | |||| || || |||||||    
T  30241687 tcattttgattccacacatcatccaaaactagcaaatatattttaccttg 30241638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 232
Target Start/End: Original strand, 30061072 - 30061236
Alignment:
Q  68 atcacgagtagacactaaaacggaagtacctttggatccacatgacaacaccgatttcaacttattccatttctcttggtttagtccgaattcaaattct 167  Q
    |||||| || |||||||||| |||| |||||||||||||||| |||||||| | |||||| || |||||||||||| |  |||  ||  |||| |||| |    
T  30061072 atcacgggtggacactaaaatggaactacctttggatccacaagacaacacaggtttcaatttgttccatttctctcgtgttaaccctgattccaattgt 30061171  T
Q  168 tcatttttgttccacacatcatccaaaaccaacaaacatcttgtaccttgcatcatttcttgcac 232  Q
    | |||||  |||||||||||||||||||||| |||| ||||| | ||||||| || | |||||||    
T  30061172 tgattttgattccacacatcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcac 30061236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 237
Target Start/End: Complemental strand, 30337960 - 30337762
Alignment:
Q  39 catgttcccgtgattgaggcaacatccatatcacgagtagacactaaaacggaagtacctttggatccacatgacaacaccgatttcaacttattccatt 138  Q
    ||||| ||| ||||||| |||||||||  ||||||||| |||||||||| |||| ||||||| |||||||| ||||| || ||||||||   |||||||     
T  30337960 catgtccccatgattgatgcaacatcctcatcacgagtggacactaaaatggaactaccttttgatccacacgacaaaacagatttcaaacgattccatc 30337861  T
Q  139 tctcttggtttagtccgaattcaaattcttcatttttgttccacacatcatccaaaaccaacaaacatcttgtaccttgcatcatttcttgcacttttc 237  Q
    | |||||  |||  ||  |||| |||| ||||||||  ||||||||||||||||||| || |||| || || | ||||||| || | ||||||| ||||    
T  30337860 tatcttgtgttaacccagattccaattgttcattttgattccacacatcatccaaaatcagcaaatatattttcccttgcaacaatccttgcacctttc 30337762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 221
Target Start/End: Complemental strand, 30330559 - 30330433
Alignment:
Q  94 tacctttggatccacatgacaacaccgatttcaacttattccatttctcttggtttagtccgaattcaaattcttcatttttgttccacacatcatccaa 193  Q
    ||||||||||| |||| ||||||||  |||||||| |||||||||||||||||  || ||||||||| | || || ||||||||||||||| || |||||    
T  30330559 tacctttggatacacacgacaacacatatttcaacatattccatttctcttggcataatccgaattctagtttttgatttttgttccacac-tcgtccaa 30330461  T
Q  194 aaccaacaaacatcttgtaccttgcatc 221  Q
    || ||||||| || || |||||| ||||    
T  30330460 aatcaacaaatatattttaccttacatc 30330433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 256
Target Start/End: Original strand, 30484072 - 30484289
Alignment:
Q  39 catgttcccgtgattgaggcaacatccatatcacgagtagacactaaaacggaagtacctttggatccacatgacaacaccgatttcaacttattccatt 138  Q
    ||||| ||| ||||||  |||||||||  ||||||||| |||||||||| |||| ||||||| |||||||| ||||| || ||||||||   |||||||     
T  30484072 catgtccccatgattgttgcaacatcctcatcacgagtggacactaaaatggaactaccttttgatccacacgacaaaacagatttcaaacgattccatc 30484171  T
Q  139 tctcttggtttagtccgaattcaaattcttcatttttgttccacacatcatccaaaaccaacaaacatcttgtaccttgcatcatttcttgcacttttct 238  Q
    | |||||  |||  ||  |||| |||| ||||||||  ||||||||||||||||||| || |||| || || | | ||||| || | ||||||| |||||    
T  30484172 tatcttgtgttaacccagattccaattgttcattttgattccacacatcatccaaaatcagcaaatatattttccgttgcaacaatccttgcacctttct 30484271  T
Q  239 ttgtattacatctaactc 256  Q
    ||  |  |||||||||||    
T  30484272 ttccaagacatctaactc 30484289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 38 - 308
Target Start/End: Original strand, 13617265 - 13617537
Alignment:
Q  38 gcatgttcccgtgattgaggcaacatccatatcacgagtagacactaaaacggaagtacctttggatccacatgacaacaccgatttcaacttattccat 137  Q
    |||||||||| ||||||| |||||||| ||||||||||||||||||||||| |||||||||||  ||||||| ||||||||  |||||||| ||||||||    
T  13617265 gcatgttcccatgattgatgcaacatcgatatcacgagtagacactaaaacagaagtacctttcaatccacaagacaacacgaatttcaacgtattccat 13617364  T
Q  138 ttctcttggtttagtccgaattcaaattcttcatttttgttccacacatcatccaaaaccaacaaacatcttgt--accttgcatcatttcttgcacttt 235  Q
    ||||  |||| || || ||||||||| |||| | |||||||||| || || |||||||| | |||| ||||| |  |||||||| |||||||||||| ||    
T  13617365 ttcttatggtctattctgaattcaaactcttgacttttgttccaaacgtcgtccaaaacaagcaaaaatcttttacaccttgcagcatttcttgcacctt 13617464  T
Q  236 tctttgtattacatctaactccattgaatcacacttttgttttgtcatggattctataatggaacacaaaatt 308  Q
    |||||||||||||||||| |   ||| ||||||||| |||||||||||||||||||||||||||  |||||||    
T  13617465 tctttgtattacatctaaatatgttgcatcacacttctgttttgtcatggattctataatggaaagcaaaatt 13617537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 39 - 307
Target Start/End: Original strand, 52352630 - 52352898
Alignment:
Q  39 catgttcccgtgattgaggcaacatccatatcacgagtagacactaaaacggaagtacctttggatccacatgacaacaccgatttcaacttattccatt 138  Q
    ||||||||| ||||||  ||||||||| |||||| ||| || ||||||| | ||| ||||||||||||||| |||||||| ||||||||||| |||||||    
T  52352630 catgttcccatgattgtcgcaacatccttatcacaagtggaaactaaaatgtaagcacctttggatccacaggacaacacagatttcaacttgttccatt 52352729  T
Q  139 tctcttggtttagtccgaattcaaattcttcatttttgttccacacatcatccaaaaccaacaaacatcttgtaccttgcatcatttcttgcacttttct 238  Q
    | |||||| ||| ||| | ||  ||||||  |||| | ||||||||||||||||||||||||||| ||||| ||||||||| || ||||||| || ||||    
T  52352730 tttcttggcttaatcctagtttgaattctagatttctattccacacatcatccaaaaccaacaaatatcttttaccttgcaacaattcttgcgctcttct 52352829  T
Q  239 ttgtattacatctaactccattgaatcacacttttgttttgtcatggattctataatggaacacaaaat 307  Q
    |||||| |||||||| || |    ||||||||||| | |||| || |||||||||||||||||||||||    
T  52352830 ttgtatcacatctaaatctaagccatcacacttttctcttgtaatagattctataatggaacacaaaat 52352898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 127
Target Start/End: Complemental strand, 20296019 - 20295929
Alignment:
Q  37 ggcatgttcccgtgattgaggcaacatccatatcacgagtagacactaaaacggaagtacctttggatccacatgacaacaccgatttcaa 127  Q
    ||||||||||| ||||||  ||||||||| |||||||||| |||||||||| |||| ||||||| |||||||||||||| || ||||||||    
T  20296019 ggcatgttcccatgattgttgcaacatccttatcacgagttgacactaaaatggaactaccttttgatccacatgacaaaacagatttcaa 20295929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 256
Target Start/End: Original strand, 26708001 - 26708220
Alignment:
Q  37 ggcatgttcccgtgattgaggcaacatccatatcacgagtagacactaaaacggaagtacctttggatccacatgacaacaccgatttcaacttattcca 136  Q
    ||||||||||| ||||||  ||||||||| |||||||||| |||||||||| |||| ||||||| |||||||| ||||| || ||||||||   ||||||    
T  26708001 ggcatgttcccatgattgttgcaacatccttatcacgagtggacactaaaatggaactaccttttgatccacaggacaaaacagatttcaaacgattcca 26708100  T
Q  137 tttctcttggtttagtccgaattcaaattcttcatttttgttccacacatcatccaaaaccaacaaacatcttgtaccttgcatcatttcttgcactttt 236  Q
    | | |||||  |||  ||  |||| |||| ||||||||  ||||||||||||||||||| || |||| || || | ||||||| || | ||||||| |||    
T  26708101 tctatcttgtgttaacccatattccaattgttcattttgattccacacatcatccaaaatcagcaaatatattttcccttgcaacaatccttgcaccttt 26708200  T
Q  237 ctttgtattacatctaactc 256  Q
    ||||  ||||||||||||||    
T  26708201 ctttccattacatctaactc 26708220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 307
Target Start/End: Complemental strand, 25293353 - 25293114
Alignment:
Q  68 atcacgagtagacactaaaacggaagtacctttggatccacatgacaacaccgatttcaacttattccatttctcttggtttagtccgaattcaaattct 167  Q
    ||||||||| |||||||||| |||| |||  |||||||||   ||||| || ||||||||| ||||| |||| |||||| ||| || |||||| ||||      
T  25293353 atcacgagtggacactaaaatggaactacgattggatccaaccgacaatacagatttcaacatattcaatttttcttgggttaatctgaattccaattgc 25293254  T
Q  168 tcatttttgttccacacatcatccaaaaccaacaaacatcttgtaccttgcatcatttcttgcacttttctttgtattacatctaactccattgaatcac 267  Q
    | |||||||||||||||||| |||||||  | |||| || || |||||||||  | ||||| ||| |||||||||||||||||||| || |  | |||||    
T  25293253 tgatttttgttccacacatcgtccaaaataagcaaatatattttaccttgcaatagttcttacacctttctttgtattacatctaaatcaaaggcatcac 25293154  T
Q  268 acttttgttttgtcatggattctataatggaacacaaaat 307  Q
    |||| | | | || || |||||||||||||||||||||||    
T  25293153 acttctctctagtgatagattctataatggaacacaaaat 25293114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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