View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8387_low_3 (Length: 307)
Name: NF8387_low_3
Description: NF8387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8387_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 296
Target Start/End: Complemental strand, 23747841 - 23747562
Alignment:
| Q |
17 |
ttcccgggggcctgtgtgaatatttagttgatgcatccctacattgattgttaaaaatgtagtttttgcactgagttgaaattttcagacttttaactaa |
116 |
Q |
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| T |
23747841 |
ttcccgggggcctgtgtgaatatttagttgatgcatccctacattgattgttaaaaatgtagtttttgcacttagttgaaattttcagacttttaactaa |
23747742 |
T |
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| Q |
117 |
ttttgaaataaaagtttttgaacatggaccactcactccaatctatattcactttcaactaaaatcaattttgaaaatcaagttcatctaaaatcaagtt |
216 |
Q |
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| T |
23747741 |
ttttgaaataaaagttttcaaacatggaccactcactccaatctatattcactttcaactaaaatcaattttgaaaataaagttcatctaaaatcaagtt |
23747642 |
T |
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| Q |
217 |
tgctaacgctgagtcaaacacataatggtttagtttaacgtctagaaaggaattaaaaagaaaagtgctgaaaatattca |
296 |
Q |
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| T |
23747641 |
tgctaacgctgagccaaacacataatggtttagtttaacgtctagaaaggagttaaaaagaaaagtgctgaaaatattca |
23747562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 23679444 - 23679343
Alignment:
| Q |
122 |
aaataaaagtttttgaacatggaccactcactcca-atctatattcactttcaactaaaatcaattttgaaaatcaagttcatctaaaatcaagtttgct |
220 |
Q |
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||||||||||||| |||||| | ||||||||||| ||| ||| ||| |||||||| |||||||||| ||||||||| ||||| |||||| ||||||||| |
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| T |
23679444 |
aaataaaagttttcaaacatgaatcactcactccacatc-atactcagtttcaactgaaatcaatttcgaaaatcaaattcatttaaaataaagtttgct |
23679346 |
T |
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| Q |
221 |
aac |
223 |
Q |
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||| |
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| T |
23679345 |
aac |
23679343 |
T |
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