View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8388_high_1 (Length: 566)
Name: NF8388_high_1
Description: NF8388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8388_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 488; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 13 - 550
Target Start/End: Complemental strand, 913756 - 913218
Alignment:
| Q |
13 |
atgaacttcagattggacaaaacaagaatttccaaacattttaccttctcaggaacctcatttcacagatttactttcatatcattttgtaaacactaaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
913756 |
atgaacttcagattggacaaaacaagaatttccaaacattttaccttctcaggaacctcatttcacagatttacttgaat--cattttgtaaacactaaa |
913659 |
T |
|
| Q |
113 |
gcaaattcaacgcacggtgagataaatgcaaataacatgttcttcatattggactcaagttactaccgttataacataagaaaccaaacaaacacttcat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
913658 |
gcaaattcaacgcacggtgagataaatgcaaataacatgttcttcagattggactcaagttactaccgttataacataagaaaccaaacaaacacttcat |
913559 |
T |
|
| Q |
213 |
ctgaaaactgaaaattcaaaaaccaacagaaatttaatctgtttgcatattactctcactaatcatgcaatgcagagggatattcaattacataacctaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
913558 |
ctgaaaactgaaaattcaaaaaccaacagaaatttaatctgtttgcatattactctcactaatcatgcaatgcagagggatattcaattacataacctaa |
913459 |
T |
|
| Q |
313 |
tacaataaagagacagtgtcattactcattaactacacaattaccggtacc---gagtctttatcattactaaatagattcaaccatgttgttcacatcc |
409 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
913458 |
tacagtaaaaagacagtgtcattactcattaactacacaattaccggtacccatgtgtctttatcattactaaatagattcaaccatgttgttcacatcc |
913359 |
T |
|
| Q |
410 |
tcgaaaaagacctttcacctcgctgctgagccgttagacaataattgccacactatctccatgattgtgtctgactggaatgattactcctctaacaaga |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
913358 |
tcgaaaaagacctttcacctcgctgctgagccgttagacaataattgccacactgtctccatgattgtgtctgactggaatgattactcctctaacaaga |
913259 |
T |
|
| Q |
510 |
agaaaggcattgatgatagtatataacaaccatgtagaagt |
550 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
913258 |
agaaaggcattgatgatagtatataacaaccatgtagaagt |
913218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 34 - 507
Target Start/End: Original strand, 888681 - 889155
Alignment:
| Q |
34 |
acaagaatttccaaacattttaccttctcaggaacctcatttcacagatttactttcatatcattttgtaaacactaaagcaaattcaacgcacggtgag |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
888681 |
acaagaatttccaaacattttaccttctcaggaacctcatttcacagatttacttgaat--cattttgtaaacactaaagcaaattcaacgcacggtgag |
888778 |
T |
|
| Q |
134 |
ataaatgcaaataacatgttcttcatattggactcaagttactaccgttataacataagaaaccaaacaaacacttcatctgaaaactgaaaattcaaaa |
233 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
888779 |
ataaatgcaaataacatgttcttcagattggactcaagttactaccgttataacataagaaaccaaacaaacacttcatctgaaaactgaaaattcaaaa |
888878 |
T |
|
| Q |
234 |
accaacagaaatttaatctgtttgcatattactctcactaatcatgcaatgcagagggatattcaattacataacctaatacaataaagagacagtgtca |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
888879 |
accaacagaaatttaatctgtttgcatattactctcactaatcatgcaatgcagagggatattcaattacataacctaatacagtaaaaagacagtgtca |
888978 |
T |
|
| Q |
334 |
ttactcattaactacacaattaccggtacc---gagtctttatcattactaaatagattcaaccatgttgttcacatcctcgaaaaagacctttcacctc |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
888979 |
ttactcattaactacacaattaccggtacccatgtgtctttatcattactaaatagattcaaccatgttgttcacatcctcgaaaaagacctttcacctc |
889078 |
T |
|
| Q |
431 |
gctgctgagccgttagacaataattgccacactatctccatgattgtgtctgactggaatgattactcctctaacaa |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
889079 |
gctgctgagccgttagacaataattgccacactgtctccatgattgtgtctgactggaatgattactcctctaacaa |
889155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 1002690 - 1002602
Alignment:
| Q |
34 |
acaagaatttccaaacattttaccttctcaggaacctcatttcacagatttactttcatatcattttgtaaacactaaagcaaattcaac |
123 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
1002690 |
acaagaatttccaaacattt-accttctcaggatcctcatttcacagatttattttcacatcattttgcaaacactaaagcaaattcaac |
1002602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 331 - 433
Target Start/End: Complemental strand, 1002189 - 1002085
Alignment:
| Q |
331 |
tcattactcattaactacacaattaccggtaccga---gtctttatcattactaaatagattcaaccatgttgttcacatcctcgaaaaagacctttcac |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||| || || |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1002189 |
tcattactcattaactacacaattaccggtaccgatgtgtctttttcaagacgaagtagattcaaccatgttgttcacatcctc-caaaagacctttcac |
1002091 |
T |
|
| Q |
428 |
ctcgct |
433 |
Q |
| |
|
|||||| |
|
|
| T |
1002090 |
ctcgct |
1002085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 119 - 212
Target Start/End: Complemental strand, 1002496 - 1002403
Alignment:
| Q |
119 |
tcaacgcacggtgagataaatgcaaataacatgttcttcatattggactcaagttactaccgttataacataagaaaccaaacaaacacttcat |
212 |
Q |
| |
|
|||| |||||||||||| || |||||||||||| || ||| ||||||| | ||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
1002496 |
tcaatgcacggtgagatgaaagcaaataacatgatcatcagattggacgcgagttactaccgttataatataagaaaccaaacaagcacttcat |
1002403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 166
Target Start/End: Complemental strand, 913786 - 913739
Alignment:
| Q |
119 |
tcaacgcacggtgagataaatgcaaataacatgttcttcatattggac |
166 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||| ||||||| |
|
|
| T |
913786 |
tcaacgcacggtgagataaatgcgaataacatgaacttcagattggac |
913739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University