View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8388_low_1 (Length: 637)
Name: NF8388_low_1
Description: NF8388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8388_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 216 - 626
Target Start/End: Original strand, 10489369 - 10489779
Alignment:
| Q |
216 |
aagataggtggttacctatttgaccatattttgtactcaatttttcatcttatcattttcaattatatatttttgtcgaatggatctcaaccaatataat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10489369 |
aagataggtggttacctatttgaccatattttgtactcaatttttcatcttatcattttcaattatatatttttgtcgaatggatctcaaccaatataat |
10489468 |
T |
|
| Q |
316 |
tttcaactatctttgttgaacttcatgcaaaattatcaacattttaatactcaaaattttcaatttttgccatcttaaaaaacgagttctttgacaattt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10489469 |
tttcaactatctttgttgaacttcatgcaaaattatcaacattttaatactcaaaattttcaatttttgccatcttaaaaaacgagttctttgacaattt |
10489568 |
T |
|
| Q |
416 |
caagcagattcattagagtatattgtagagcacttttcatattaatattaattaaaaatattgaactaatattttaagctgcaataaaattaagtatgaa |
515 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10489569 |
caagcagattcattagagtatattttagagcacttttcatattaatattaattaaaaatattgaactaatattttaagctgcaataaaattaagtatgaa |
10489668 |
T |
|
| Q |
516 |
taaaatactaatatgtaagataaagttgtcggattcaatatatgttccttataatggcctcatttgagccattataaggagtgatgaaaattggattcgt |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
10489669 |
taaaatactaatatgtaagataaagttgtcggattcaatatatgctccttataatggcctcatttgagccattataaggagtggtgaaaattggattcgt |
10489768 |
T |
|
| Q |
616 |
attgtgttcat |
626 |
Q |
| |
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||||||||||| |
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| T |
10489769 |
attgtgttcat |
10489779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 10488658 - 10488860
Alignment:
| Q |
18 |
ctttgcggggtgaagaagttgtgaagaaacttagtttaagtgaaaaatggggactttgtgataactgagtaaaaatgatttgaaaaagttgcaaataggt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10488658 |
ctttgcggggtgaagaagttgtgaagaaacttagtttaagtgaaaaatggggactttgtgataactgagtaaaaatgatttgaaaaagttgcaaaaaggt |
10488757 |
T |
|
| Q |
118 |
gaaaagaaaaagaatggttgctttgtggttagttaatataaaagatagcacatgaaaatatgattttcttgtgggaaagatgggacaaagattcaaataa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10488758 |
gaaaagaaaaagaatggttgctttgtggttagttaatataaaagatagcacatgaaaatatgattttcttgtgggaaagatgggacaaagattcaaataa |
10488857 |
T |
|
| Q |
218 |
gat |
220 |
Q |
| |
|
||| |
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|
| T |
10488858 |
gat |
10488860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 457 - 542
Target Start/End: Original strand, 3619319 - 3619405
Alignment:
| Q |
457 |
ttaatattaattaaaaatattgaact-aatattttaagctgcaataaaattaagtatgaataaaatactaatatgtaagataaagtt |
542 |
Q |
| |
|
||||||||||||||| |||||||| | || ||||||| || |||||||||| ||||||||||||| ||||||||| ||||||| |
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| T |
3619319 |
ttaatattaattaaagatattgaaattaacattttaaattgtgataaaattaaatatgaataaaatataaatatgtaaagtaaagtt |
3619405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 557
Target Start/End: Original strand, 7393773 - 7393882
Alignment:
| Q |
449 |
ttttcatattaatattaattaaaaata-ttgaactaatattttaagctgcaataaaattaagtatgaataaaatactaatatgtaagataaagttgtcgg |
547 |
Q |
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||||||||||||||||||||||||| | | || |||||| ||||| |||| || |||||| |||||| |||| | |||||||| || |||| || | || |
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| T |
7393773 |
ttttcatattaatattaattaaaaacactaaaattaatatattaagttgcagtacaattaaatatgaacaaaacattaatatgtgaggtaaatttatggg |
7393872 |
T |
|
| Q |
548 |
attcaatata |
557 |
Q |
| |
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|| ||||||| |
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|
| T |
7393873 |
atccaatata |
7393882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 449 - 544
Target Start/End: Complemental strand, 34782298 - 34782202
Alignment:
| Q |
449 |
ttttcatattaatattaattaaaaata-ttgaactaatattttaagctgcaataaaattaagtatgaataaaatactaatatgtaagataaagttgt |
544 |
Q |
| |
|
||||| |||||||||||||| |||||| || || |||||||||||| |||||||||||||| |||||||| || | | |||||| || ||||||||| |
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|
| T |
34782298 |
ttttcgtattaatattaatttaaaataattaaattaatattttaagttgcaataaaattaaatatgaatataacattgatatgtgaggtaaagttgt |
34782202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 363
Target Start/End: Complemental strand, 34485641 - 34485602
Alignment:
| Q |
324 |
atctttgttgaacttcatgcaaaattatcaacattttaat |
363 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| ||||| |
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| T |
34485641 |
atctttgttgaatttcatgcaaaattatcaacatcttaat |
34485602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 449 - 544
Target Start/End: Complemental strand, 7817819 - 7817723
Alignment:
| Q |
449 |
ttttcatattaatattaattaaaaatattgaactaatatttta-agctgcaataaaattaagtatgaataaaatactaatatgtaagataaagttgt |
544 |
Q |
| |
|
|||| |||||||||||||||||||| | || ||||||||| || ||||||||||| |||||||||||||||| |||||||| ||||||| |||| |
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| T |
7817819 |
ttttaatattaatattaattaaaaaactaaaattaatattttttagttgcaataaaataaagtatgaataaaatattaatatgtgagataaaattgt |
7817723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 544
Target Start/End: Complemental strand, 29168439 - 29168391
Alignment:
| Q |
496 |
gcaataaaattaagtatgaataaaatactaatatgtaagataaagttgt |
544 |
Q |
| |
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||||||||||||| || ||||||||||||||||||||| ||||||||| |
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| T |
29168439 |
gcaataaaattaaataaaaataaaatactaatatgtaaggtaaagttgt |
29168391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 450 - 544
Target Start/End: Complemental strand, 19730110 - 19730015
Alignment:
| Q |
450 |
tttcatattaatattaattaaaaata-ttgaactaatattttaagctgcaataaaattaagtatgaataaaatactaatatgtaagataaagttgt |
544 |
Q |
| |
|
||||||||| ||||||||| |||||| || || |||||||||||| || ||||||||||| ||||||| |||| |||||| | || ||||||||| |
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|
| T |
19730110 |
tttcatattgatattaatttaaaataattaaaataatattttaagttgtaataaaattaaacatgaatataatattaatatatgaggtaaagttgt |
19730015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 482 - 557
Target Start/End: Original strand, 41352293 - 41352368
Alignment:
| Q |
482 |
taatattttaagctgcaataaaattaagtatgaataaaatactaatatgtaagataaagttgtcggattcaatata |
557 |
Q |
| |
|
|||||||||||| | ||||||||||| ||||||| |||| |||||||| |||||||||||| ||| |||||||| |
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| T |
41352293 |
taatattttaagtcgtaataaaattaaatatgaatgtaatattaatatgtgagataaagttgtgggactcaatata |
41352368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 449 - 527
Target Start/End: Original strand, 47098560 - 47098639
Alignment:
| Q |
449 |
ttttcatattaatattaattaaaaat-attgaactaatattttaagctgcaataaaattaagtatgaataaaatactaat |
527 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| || ||||||||||| || ||||||||||| |||||||| |||| |||| |
|
|
| T |
47098560 |
ttttcatattaatattaatttaaaataattaaattaatattttaaattgtaataaaattaaatatgaatataatattaat |
47098639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 376
Target Start/End: Complemental strand, 2371093 - 2371025
Alignment:
| Q |
308 |
aatataattttcaactatctttgttgaacttcatgcaaaattatcaacattttaatactcaaaattttc |
376 |
Q |
| |
|
||||||||||| |||| ||| ||||| | || | |||||||||||||||| |||| |||||||||||| |
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|
| T |
2371093 |
aatataatttttaactgtctatgttgcattttaagcaaaattatcaacatcctaattctcaaaattttc |
2371025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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