View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8388_low_3 (Length: 335)

Name: NF8388_low_3
Description: NF8388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8388_low_3
NF8388_low_3
[»] chr4 (14 HSPs)
chr4 (18-328)||(38129448-38129758)
chr4 (131-328)||(38125495-38125692)
chr4 (142-328)||(38090661-38090847)
chr4 (145-261)||(38061844-38061960)
chr4 (142-299)||(36107946-36108103)
chr4 (141-261)||(37954156-37954276)
chr4 (142-299)||(36100687-36100844)
chr4 (142-286)||(34971542-34971686)
chr4 (145-261)||(38058494-38058610)
chr4 (142-296)||(21482681-21482835)
chr4 (148-284)||(36080097-36080233)
chr4 (145-200)||(38081968-38082023)
chr4 (148-250)||(38072833-38072935)
chr4 (148-185)||(38086408-38086445)
[»] chr7 (2 HSPs)
chr7 (22-167)||(48875700-48875845)
chr7 (205-253)||(48875645-48875693)
[»] chr1 (2 HSPs)
chr1 (25-152)||(2895406-2895533)
chr1 (147-185)||(34268711-34268749)
[»] chr2 (6 HSPs)
chr2 (148-328)||(11933708-11933888)
chr2 (148-328)||(11946929-11947109)
chr2 (175-326)||(11821182-11821333)
chr2 (142-299)||(8338571-8338728)
chr2 (148-326)||(11835004-11835182)
chr2 (145-200)||(11811313-11811368)
[»] chr6 (3 HSPs)
chr6 (142-299)||(6838707-6838864)
chr6 (147-185)||(10792886-10792924)
chr6 (145-185)||(7001500-7001540)
[»] chr3 (2 HSPs)
chr3 (165-253)||(2152457-2152545)
chr3 (166-253)||(2176116-2176203)


Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 38129758 - 38129448
Alignment:
Q  18 tgtatgcggcgcaacttgttgccactggaaaacaatgtcggtagcattctgctccaaactcttgtctacttgaaaaactgtaaccttttctggtaccgaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38129758 tgtatgcggcgcaacttgttgccactggaaaacaatgtcggtagcattctgctccaaactcttgtctacttgaaaaactgtaaccttttctggtaccgaa 38129659  T
Q  118 acaagtttaaccgtgtacgataagataactccaaaacttgctcctccacctcctctaatagcccaaaaaagatcttcccccatagttttcttgtcaagaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38129658 acaagtttaaccgtgtacgataagataactccaaaacttgctcctccacctcctctaatagcccaaaaaagatcttcccccatagttttcttgtcaagaa 38129559  T
Q  218 ttctaccattgacatcaataattttagcatcaacaatattatcaatagataacccgaattttctcatcatgttaccataccctcctccactcaaatggcc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38129558 ttctaccattgacatcaataattttagcatcaacaatattatcaatagataacccgaattttctcatcatgttaccataccctcctccactcaaatggcc 38129459  T
Q  318 accaacaccaa 328  Q
    |||||||||||    
T  38129458 accaacaccaa 38129448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 131 - 328
Target Start/End: Complemental strand, 38125692 - 38125495
Alignment:
Q  131 tgtacgataagataactccaaaacttgctcctccacctcctctaatagcccaaaaaagatcttcccccatagttttcttgtcaagaattctaccattgac 230  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | |||| | |||||||| |||||||| ||    
T  38125692 tgtatgataaaataactccaaaacttgctcctccacctcctctaatagcccaaaaaagttcttcacccattgatttcctatcaagaatcctaccattaac 38125593  T
Q  231 atcaataattttagcatcaacaatattatcaatagataacccgaattttctcatcatgttaccataccctcctccactcaaatggccaccaacaccaa 328  Q
    ||||| ||||| ||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| || |||||||||||||    
T  38125592 atcaacaatttcagcatcaacaacattatcaatagacaacccaaattttctcatcatgttaccataccctccaccactcaagtgaccaccaacaccaa 38125495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 142 - 328
Target Start/End: Complemental strand, 38090847 - 38090661
Alignment:
Q  142 ataactccaaaacttgctcctccacctcctctaatagcccaaaaaagatcttcccccatagttttcttgtcaagaattctaccattgacatcaataattt 241  Q
    ||||| |||||||| ||||| ||||| ||||||||||||||||||| |||||||||||| | || | | ||||| | ||| ||||  ||||||| ||| |    
T  38090847 ataacaccaaaactagctccaccaccacctctaatagcccaaaaaacatcttcccccattgattccctatcaagcactcttccatcaacatcaacaatct 38090748  T
Q  242 tagcatcaacaatattatcaatagataacccgaattttctcatcatgttaccataccctcctccactcaaatggccaccaacaccaa 328  Q
    ||||||| | ||||||||||| ||||||||| |||||||||||||||||||||||||| || ||||| ||||| |||||||||||||    
T  38090747 tagcatccaaaatattatcaacagataacccaaattttctcatcatgttaccataccccccaccactaaaatgtccaccaacaccaa 38090661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 261
Target Start/End: Original strand, 38061844 - 38061960
Alignment:
Q  145 actccaaaacttgctcctccacctcctctaatagcccaaaaaagatcttcccccatagttttcttgtcaagaattctaccattgacatcaataattttag 244  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| | ||   |||||||||  ||||| || |||||||| || | ||    
T  38061844 actccaaaacttgctcctccacctcctctaatagcccaaaaaaaatcctcacccattgcttctctgtcaagaaacctacccttcacatcaattatgtgag 38061943  T
Q  245 catcaacaatattatca 261  Q
    |||||| ||||||||||    
T  38061944 catcaataatattatca 38061960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 299
Target Start/End: Complemental strand, 36108103 - 36107946
Alignment:
Q  142 ataactccaaaacttgctcctccacctcctctaatagcccaaaaaagatcttcccccatagttttcttgtcaagaattctaccattgacatcaataattt 241  Q
    ||||| |||||||| || || ||||| ||||| |||||||||||||||||||| ||||| | |||  | ||||||||  |||| || |||||||  ||||    
T  36108103 ataacaccaaaactagcaccaccaccacctcttatagcccaaaaaagatcttctcccattgattttctatcaagaatattacccttaacatcaaccattt 36108004  T
Q  242 tagcatcaacaatattatcaatagataacccgaattttctcatcatgttaccataccc 299  Q
    | ||||||| ||||||||||| ||| |  || |||||||||||||  |||||||||||    
T  36108003 ttgcatcaataatattatcaacagaaagaccaaattttctcatcaaattaccataccc 36107946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 37954276 - 37954156
Alignment:
Q  141 gataactccaaaacttgctcctccacctcctctaatagcccaaaaaagatcttcccccatagttttcttgtcaagaattctaccattgacatcaataatt 240  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||| || ||||| | ||   |||||||||  |||||||| |||||||| ||     
T  37954276 gataactccaaagcttgctcctccacctcctctaatagcccaaaacagatcctcacccatcgattctctgtcaagaaccctaccattcacatcaattatg 37954177  T
Q  241 ttagcatcaacaatattatca 261  Q
    | ||| ||||  |||||||||    
T  37954176 tgagcgtcaagtatattatca 37954156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 299
Target Start/End: Complemental strand, 36100844 - 36100687
Alignment:
Q  142 ataactccaaaacttgctcctccacctcctctaatagcccaaaaaagatcttcccccatagttttcttgtcaagaattctaccattgacatcaataattt 241  Q
    ||||| |||||||| || || ||||| || || ||||||||||| |||||||| ||||| |  ||  | ||||| ||  ||||||||||||||| |||||    
T  36100844 ataacaccaaaactagcaccaccaccaccccttatagcccaaaatagatcttctcccattgactttctatcaaggatattaccattgacatcaacaattt 36100745  T
Q  242 tagcatcaacaatattatcaatagataacccgaattttctcatcatgttaccataccc 299  Q
    | |||||||  |||||||||||||| |  || |||||||||||||  |||||||||||    
T  36100744 ttgcatcaatgatattatcaatagaaagaccaaattttctcatcaaattaccataccc 36100687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 286
Target Start/End: Original strand, 34971542 - 34971686
Alignment:
Q  142 ataactccaaaacttgctcctccacctcctctaatagcccaaaaaagatcttcccccatagttttcttgtcaagaattctaccattgacatcaataattt 241  Q
    ||||| |||||||| || || ||||| ||||| ||||||||||| |||||||| ||||| |  ||  | ||||||||  ||||||||||||||| |||||    
T  34971542 ataacaccaaaactagcaccaccaccacctctgatagcccaaaagagatcttctcccattgactttctatcaagaatattaccattgacatcaacaattt 34971641  T
Q  242 tagcatcaacaatattatcaatagataacccgaattttctcatca 286  Q
    | || ||||  |||||||||||||| |  || |||||||||||||    
T  34971642 ttgcgtcaatgatattatcaatagaaagaccaaattttctcatca 34971686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 261
Target Start/End: Complemental strand, 38058610 - 38058494
Alignment:
Q  145 actccaaaacttgctcctccacctcctctaatagcccaaaaaagatcttcccccatagttttcttgtcaagaattctaccattgacatcaataattttag 244  Q
    ||||||||||||||||||||||| ||||||||||||||||| | |||||| ||||| | ||   |||||||||  ||||| || |||||||| || | ||    
T  38058610 actccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaagaaacctacccttcacatcaattatgtgag 38058511  T
Q  245 catcaacaatattatca 261  Q
    ||||||  |||||||||    
T  38058510 catcaattatattatca 38058494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 296
Target Start/End: Complemental strand, 21482835 - 21482681
Alignment:
Q  142 ataactccaaaacttgctcctccacctcctctaatagcccaaaaaagatcttcccccatagttttcttgtcaagaattctaccattgacatcaataattt 241  Q
    ||||| ||| |||| || || ||||| ||||| |||||||||||||||||||| ||||| | |||  | ||||| ||  ||||||| ||||||| |||||    
T  21482835 ataacaccataactagcaccaccaccacctcttatagcccaaaaaagatcttctcccattgattttctatcaaggatattaccattcacatcaacaattt 21482736  T
Q  242 tagcatcaacaatattatcaatagataacccgaattttctcatcatgttaccata 296  Q
    | || |||| ||||||||||| ||| |  || |||||||||||||| || |||||    
T  21482735 ttgcgtcaataatattatcaacagaaagaccaaattttctcatcatatttccata 21482681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 284
Target Start/End: Complemental strand, 36080233 - 36080097
Alignment:
Q  148 ccaaaacttgctcctccacctcctctaatagcccaaaaaagatcttcccccatagttttcttgtcaagaattctaccattgacatcaataattttagcat 247  Q
    ||||||||||| || ||||| || || ||||||||||| | |||||| ||||| | |||  | |||||||| |||||||| ||||||| |||||| || |    
T  36080233 ccaaaacttgcaccaccaccaccccttatagcccaaaataaatcttctcccattgattttctatcaagaatactaccattaacatcaacaatttttgcgt 36080134  T
Q  248 caacaatattatcaatagataacccgaattttctcat 284  Q
    |||  |||||||||| |||||  || |||||||||||    
T  36080133 caattatattatcaacagatagaccaaattttctcat 36080097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 38082023 - 38081968
Alignment:
Q  145 actccaaaacttgctcctccacctcctctaatagcccaaaaaagatcttcccccat 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||  |||||| |||||    
T  38082023 actccaaaacttgctcctccaccacctctaatagcccaaaaataatcttcacccat 38081968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 38072935 - 38072833
Alignment:
Q  148 ccaaaacttgctcctccacctcctctaatagcccaaaaaagatcttcccccatagttttcttgtcaagaattctaccattgacatcaataattttagcat 247  Q
    |||||||||||||||||||| ||||||||||||||||| | |||||| ||||| | ||   |||||||||  ||||| || |||||||| || | |||||    
T  38072935 ccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaagaaacctacccttcacatcaattatgtgagcat 38072836  T
Q  248 caa 250  Q
    |||    
T  38072835 caa 38072833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 38086445 - 38086408
Alignment:
Q  148 ccaaaacttgctcctccacctcctctaatagcccaaaa 185  Q
    |||||||||||||||||||| |||||||||||||||||    
T  38086445 ccaaaacttgctcctccaccacctctaatagcccaaaa 38086408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 48875845 - 48875700
Alignment:
Q  22 tgcggcgcaacttgttgccactggaaaacaatgtcggtagcattctgctccaaactcttgtctacttgaaaaactgtaaccttttctggtaccgaaacaa 121  Q
    |||||| |||||| |||||||||||||||| | || |||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| |||||||    
T  48875845 tgcggcacaacttcttgccactggaaaacagtatcagtagcattttgctccaaactcttgtcaacttgaaaaactgtaaccttttctcgtactgaaacaa 48875746  T
Q  122 gtttaaccgtgtacgataagataactccaaaacttgctcctccacc 167  Q
    |||||||  || | ||||| || |||||||||||||||||||||||    
T  48875745 gtttaacaatggatgataaaatgactccaaaacttgctcctccacc 48875700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 48875693 - 48875645
Alignment:
Q  205 ttcttgtcaagaattctaccattgacatcaataattttagcatcaacaa 253  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||    
T  48875693 ttcttgtcaagaatcctaccattgacatcaacaattttagcatcaacaa 48875645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 25 - 152
Target Start/End: Original strand, 2895406 - 2895533
Alignment:
Q  25 ggcgcaacttgttgccactggaaaacaatgtcggtagcattctgctccaaactcttgtctacttgaaaaactgtaaccttttctggtaccgaaacaagtt 124  Q
    ||||||| |||||||||| | |||||||| || |||||||||||||| ||||||||||| |||| ||||||||| || |||| | | |||||||||||||    
T  2895406 ggcgcaaattgttgccaccgaaaaacaatatcagtagcattctgctctaaactcttgtcaacttaaaaaactgtcacgttttttcgcaccgaaacaagtt 2895505  T
Q  125 taaccgtgtacgataagataactccaaa 152  Q
    || | ||||| ||||| || ||||||||    
T  2895506 tagcagtgtatgataaaatgactccaaa 2895533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 34268711 - 34268749
Alignment:
Q  147 tccaaaacttgctcctccacctcctctaatagcccaaaa 185  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  34268711 tccaaaacttgctcctccacctcctctaatagctcaaaa 34268749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 148 - 328
Target Start/End: Complemental strand, 11933888 - 11933708
Alignment:
Q  148 ccaaaacttgctcctccacctcctctaatagcccaaaaaagatcttcccccatagttttcttgtcaagaattctaccattgacatcaataattttagcat 247  Q
    ||||| || ||||| ||||| ||| |||||||||||||||||||||| ||||| | |||  | ||||| | ||||||||| ||||| || ||||  ||||    
T  11933888 ccaaagctagctccaccaccacctttaatagcccaaaaaagatcttctcccattgattttctatcaagcaatctaccattaacatcgattatttgtgcat 11933789  T
Q  248 caacaatattatcaatagataacccgaattttctcatcatgttaccataccctcctccactcaaatggccaccaacaccaa 328  Q
    | | |||||||||||  || |  ||  |||||||||||||||||||||| || || ||||| ||||| || ||||||||||    
T  11933788 cgataatattatcaactgaaagaccatattttctcatcatgttaccatatccaccaccacttaaatgtcctccaacaccaa 11933708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 148 - 328
Target Start/End: Complemental strand, 11947109 - 11946929
Alignment:
Q  148 ccaaaacttgctcctccacctcctctaatagcccaaaaaagatcttcccccatagttttcttgtcaagaattctaccattgacatcaataattttagcat 247  Q
    ||||| || ||||| ||||| ||| |||||||||||||||||||||| ||||| | |||  | ||||| | ||||||||| ||||| || ||||  ||||    
T  11947109 ccaaagctagctccaccaccacctttaatagcccaaaaaagatcttctcccattgattttctatcaagcaatctaccattaacatcgattatttgtgcat 11947010  T
Q  248 caacaatattatcaatagataacccgaattttctcatcatgttaccataccctcctccactcaaatggccaccaacaccaa 328  Q
    | | |||||||||||  || |  ||  |||||||||||||||||||||| || || ||||| ||||| || ||||||||||    
T  11947009 cgataatattatcaactgaaagaccatattttctcatcatgttaccatatccaccaccacttaaatgtcctccaacaccaa 11946929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 326
Target Start/End: Complemental strand, 11821333 - 11821182
Alignment:
Q  175 atagcccaaaaaagatcttcccccatagttttcttgtcaagaattctaccattgacatcaataattttagcatcaacaatattatcaatagataacccga 274  Q
    |||||||||||||||||||| ||||| | |||| | |  | ||  ||||| || ||||||| ||||| |||||||| ||||||||||| |||||| ||      
T  11821333 atagcccaaaaaagatcttcacccattgatttcctattcaaaagcctacccttaacatcaacaatttcagcatcaataatattatcaacagataaaccat 11821234  T
Q  275 attttctcatcatgttaccataccctcctccactcaaatggccaccaacacc 326  Q
    |||||| || |||  ||||||||||||| ||||| ||||| |||||||||||    
T  11821233 attttcgcaacattgtaccataccctccaccactgaaatgaccaccaacacc 11821182  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 142 - 299
Target Start/End: Complemental strand, 8338728 - 8338571
Alignment:
Q  142 ataactccaaaacttgctcctccacctcctctaatagcccaaaaaagatcttcccccatagttttcttgtcaagaattctaccattgacatcaataattt 241  Q
    ||||| |||||||| || || ||||| || |||||||||||||| |||||||| ||||| | |||  | |||||| |  |||||||||||||||||||||    
T  8338728 ataacaccaaaactagcaccaccaccacccctaatagcccaaaacagatcttctcccattgattttctatcaagagtattaccattgacatcaataattt 8338629  T
Q  242 tagcatcaacaatattatcaatagataacccgaattttctcatcatgttaccataccc 299  Q
    | || ||||  |||||||||| ||| |  || || ||||||||||  || ||||||||    
T  8338628 ttgcgtcaatgatattatcaacagaaagaccaaactttctcatcaaatttccataccc 8338571  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 326
Target Start/End: Original strand, 11835004 - 11835182
Alignment:
Q  148 ccaaaacttgctcctccacctcctctaatagcccaaaaaagatcttcccccatagttttcttgtcaagaattctaccattgacatcaataattttagcat 247  Q
    |||||||| || || ||||| ||||  |||||||||||||||||||| ||||| | |||| | |  | ||  || || || ||||||| ||||| |||||    
T  11835004 ccaaaactagcaccaccaccgcctcgtatagcccaaaaaagatcttcacccattgatttcctattcaaaagccttcccttaacatcaacaatttcagcat 11835103  T
Q  248 caacaatattatcaatagataacccgaattttctcatcatgttaccataccctcctccactcaaatggccaccaacacc 326  Q
    ||| ||||||||||| |||||| ||  ||||||||| |||   |||||||||||| ||||| |  || |||||||||||    
T  11835104 caataatattatcaacagataaaccatattttctcaacattgcaccataccctccaccactgacgtgaccaccaacacc 11835182  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 11811313 - 11811368
Alignment:
Q  145 actccaaaacttgctcctccacctcctctaatagcccaaaaaagatcttcccccat 200  Q
    |||||||| |||| ||||||||||||||| ||||||||||| | |||||| |||||    
T  11811313 actccaaagcttgatcctccacctcctcttatagcccaaaataaatcttcacccat 11811368  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 299
Target Start/End: Complemental strand, 6838864 - 6838707
Alignment:
Q  142 ataactccaaaacttgctcctccacctcctctaatagcccaaaaaagatcttcccccatagttttcttgtcaagaattctaccattgacatcaataattt 241  Q
    ||||| |||||||| || || ||||| ||||| || ||||||||||||||||| ||||| | |||  | ||||||||  |||| || ||||||| |||||    
T  6838864 ataacaccaaaactagcaccaccaccacctcttatggcccaaaaaagatcttctcccattgattttctatcaagaatattacccttaacatcaacaattt 6838765  T
Q  242 tagcatcaacaatattatcaatagataacccgaattttctcatcatgttaccataccc 299  Q
    | || |||| ||||||||||||||| |  || |||||||||||||  || ||||||||    
T  6838764 ttgcgtcaataatattatcaatagaaagaccaaattttctcatcaaatttccataccc 6838707  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 10792924 - 10792886
Alignment:
Q  147 tccaaaacttgctcctccacctcctctaatagcccaaaa 185  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  10792924 tccaaaacttgctcctccacctcctctaatagctcaaaa 10792886  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 7001500 - 7001540
Alignment:
Q  145 actccaaaacttgctcctccacctcctctaatagcccaaaa 185  Q
    ||||||||||||||||||||| | ||||||||||| |||||    
T  7001500 actccaaaacttgctcctccagcacctctaatagctcaaaa 7001540  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 253
Target Start/End: Complemental strand, 2152545 - 2152457
Alignment:
Q  165 acctcctctaatagcccaaaaaagatcttcccccatagttttcttgtcaagaattctaccattgacatcaataattttagcatcaacaa 253  Q
    ||||||||||||||||||||||| |||||| ||||| | |||  | ||||||||| | ||||| ||||| ||||  | |||||||||||    
T  2152545 acctcctctaatagcccaaaaaacatcttctcccattgattttctatcaagaattttcccatttacatctataaggtgagcatcaacaa 2152457  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 253
Target Start/End: Complemental strand, 2176203 - 2176116
Alignment:
Q  166 cctcctctaatagcccaaaaaagatcttcccccatagttttcttgtcaagaattctaccattgacatcaataattttagcatcaacaa 253  Q
    |||||||||||||||||||||| |||||| ||||| | |||  | ||||||||| | ||||| ||||| ||||  | |||||||||||    
T  2176203 cctcctctaatagcccaaaaaacatcttctcccattgattttctatcaagaattttcccatttacatctataaggtgagcatcaacaa 2176116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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