View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8388_low_5 (Length: 319)
Name: NF8388_low_5
Description: NF8388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8388_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 35170361 - 35170669
Alignment:
| Q |
1 |
ttgtatggtatgttgattaggattcttaagttgcttaagaatccacattttatggcgaaacctgcgttgattgagttgaataggtgtattattcaggctg |
100 |
Q |
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| T |
35170361 |
ttgtatggtatgttgattaggattcttaagttgcttaagaatccacattttatggcgaaacctgcgttgattgagttgaataggtgtattattcaggctg |
35170460 |
T |
|
| Q |
101 |
gtggagcttcgacgcagagtgttcttttgacggctgttggtagtattagagagggtttgaatgatacggattggaaaacacgtaaagcggcttccgttgc |
200 |
Q |
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| T |
35170461 |
gtggagcttcgacgcagagtgttcttttgactgctgttggtagtattagagagggtttgaatgatacggattggaaaacacgtaaagcggcttccgttgc |
35170560 |
T |
|
| Q |
201 |
gttgggacaaattgctttgactcgtgcttcgttcttgtcgtctttgagggcttcttgtattcattctcttgattcatcgaggtttgataaggtggttact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35170561 |
gttgggacaaattgctttgactcgtgcttcgttcttgtcgtctttgagggcttcttgtattcattctcttgattcatcgaggtttgataaggtggttact |
35170660 |
T |
|
| Q |
301 |
cactctctg |
309 |
Q |
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||||||||| |
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| T |
35170661 |
cactctctg |
35170669 |
T |
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