View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8388_low_8 (Length: 223)
Name: NF8388_low_8
Description: NF8388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8388_low_8 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 30411829 - 30411623
Alignment:
| Q |
18 |
ttaacaacattatcttcattgttcaggcaaagaaggctgcaataagagtaggaagcaatggagtccaagttaatgcacatccacatgaccaaaatgtttc |
117 |
Q |
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| T |
30411829 |
ttaacaacattatcttcattgttcaggcaaagaaggctgcaataagagtacgaggcaatggagtccaagttaatgcacatccacatgaccaaaatgtttc |
30411730 |
T |
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| Q |
118 |
tgctccgtag-ttaaatccttccattagaattttatgtggaaagtggaaacaaaactcacctaaataataagtactccatagtatataatccaccaatac |
216 |
Q |
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| T |
30411729 |
tgctccgtagtttaaatccctccattagaattttatgtggaaagtggaaacaaaactcagctaaataataagtactccatagtatataatccaccaatac |
30411630 |
T |
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| Q |
217 |
agtactt |
223 |
Q |
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||||||| |
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| T |
30411629 |
agtactt |
30411623 |
T |
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Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 30429384 - 30429289
Alignment:
| Q |
18 |
ttaacaacattatcttcattgttcaggcaaagaaggctgcaataagagtaggaagcaatggagtccaagttaatgcacatccacatgaccaaaatg |
113 |
Q |
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|||||||||||||||||||| ||||||| || ||||||||||||||||| | | ||| |||||||||||| ||||||| | ||| ||||||||||| |
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| T |
30429384 |
ttaacaacattatcttcattcttcaggctaataaggctgcaataagagttgcaggcagtggagtccaagtgaatgcactttcacttgaccaaaatg |
30429289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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