View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8388_low_9 (Length: 221)
Name: NF8388_low_9
Description: NF8388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8388_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 3746208 - 3746367
Alignment:
| Q |
15 |
tggtggtggggttaagagtgattttgatgctaactctagagaagccaaagtagtgaaggagagaagagaataatggaagatgaatgaagtgtagctaaga |
114 |
Q |
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| T |
3746208 |
tggtggtggggtta-gagtgattttgatgctaactctagagaaaccaaaatagtgaaggagagaagagaataatggaagatgaatgaagtgtagccaaga |
3746306 |
T |
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| Q |
115 |
ggggtttgtttataagacaccaaatatagagggagaaaagtgaactaaaaaggacaaaaga |
175 |
Q |
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| T |
3746307 |
ggggtttgtttataagacaacaagtatagagggagaaaagtgaactaaaaaggacaaaaga |
3746367 |
T |
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