View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8389_high_1 (Length: 318)

Name: NF8389_high_1
Description: NF8389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8389_high_1
NF8389_high_1
[»] chr3 (1 HSPs)
chr3 (1-301)||(36292988-36293288)
[»] chr8 (5 HSPs)
chr8 (217-292)||(35764720-35764792)
chr8 (219-289)||(2111013-2111080)
chr8 (219-272)||(37740760-37740813)
chr8 (228-290)||(8407584-8407643)
chr8 (219-293)||(10861085-10861156)
[»] chr2 (2 HSPs)
chr2 (204-295)||(21938031-21938119)
chr2 (207-248)||(27863906-27863947)
[»] chr6 (2 HSPs)
chr6 (219-293)||(29052691-29052762)
chr6 (219-272)||(2748289-2748342)
[»] chr1 (2 HSPs)
chr1 (219-289)||(3160987-3161054)
chr1 (219-290)||(1714040-1714108)
[»] scaffold0010 (1 HSPs)
scaffold0010 (219-291)||(166735-166804)
[»] chr7 (1 HSPs)
chr7 (222-272)||(31627640-31627690)
[»] chr5 (1 HSPs)
chr5 (219-272)||(41892771-41892824)
[»] chr4 (2 HSPs)
chr4 (220-272)||(33890281-33890333)
chr4 (219-289)||(39033634-39033701)


Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 36292988 - 36293288
Alignment:
Q  1 taatgtttcagatgatgaagtaacagagcaacatccattggatgaaaatggtggcgttggaggaggatttgaccttggatggttacctgcttttcctcac 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36292988 taatgtttcagatgatgaagtgacagagcaacatccattggatgaaaatggtggcgttggaggaggatttgaccttggatggttaccttcttttcctcac 36293087  T
Q  101 gttctcattgcttctttgtccaatttcacctttggttatcatattgggtcagttactttctatttccatttatgtactagcttatagcttagagttgata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36293088 gttctcattgcttctttgtccaatttcacctttggttatcatattgggtcagttactttctatttccatttatgtactagcttatagcttagagttgata 36293187  T
Q  201 gtggataaataatttggttgattgaatttgcagtgtttgataaaattaactctttaactagcttataaatattatgaaatgacataaaaatatgtttaat 300  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  36293188 gtggataaataagttggttgattgaatttgcagtgttttataaaattaactctttaactagcttataaatattatgaaatgacataaaaatatgttcaat 36293287  T
Q  301 c 301  Q
    |    
T  36293288 c 36293288  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 292
Target Start/End: Complemental strand, 35764792 - 35764720
Alignment:
Q  217 gttgattgaatttgcagtgtttgataaaattaactctttaactagcttataaatattatgaaatgacataaaaata 292  Q
    ||||||||||||||||||||||| |||||||| |  || |||||| |||||||   ||||||||||||||||||||    
T  35764792 gttgattgaatttgcagtgtttggtaaaattagcggttgaactagtttataaa---tatgaaatgacataaaaata 35764720  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 2111080 - 2111013
Alignment:
Q  219 tgattgaatttgcagtgtttgataaaattaactctttaactagcttataaatattatgaaatgacataaaa 289  Q
    ||||||||||||||||||||| |||||||| |  || ||||||||||||||   |||||||||||||||||    
T  2111080 tgattgaatttgcagtgtttggtaaaattagcggttgaactagcttataaa---tatgaaatgacataaaa 2111013  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 37740813 - 37740760
Alignment:
Q  219 tgattgaatttgcagtgtttgataaaattaactctttaactagcttataaatat 272  Q
    |||||||||||| ||||||||||| ||||| || || ||||||||| |||||||    
T  37740813 tgattgaatttgtagtgtttgatacaattagctgttgaactagcttttaaatat 37740760  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 8407643 - 8407584
Alignment:
Q  228 ttgcagtgtttgataaaattaactctttaactagcttataaatattatgaaatgacataaaaa 290  Q
    |||||||||||| |||||||| |  || ||||||||||||||   ||||||||||||||||||    
T  8407643 ttgcagtgtttggtaaaattagcggttgaactagcttataaa---tatgaaatgacataaaaa 8407584  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 10861156 - 10861085
Alignment:
Q  219 tgattgaatttgcagtgtttgataaaattaactctttaactagcttataaatattatgaaatgacataaaaatat 293  Q
    |||||||||||| | ||||||||||||| |||   | ||||||||||||||   |||||||||||||| ||||||    
T  10861156 tgattgaatttgtaatgtttgataaaatcaacaactgaactagcttataaa---tatgaaatgacatataaatat 10861085  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 295
Target Start/End: Complemental strand, 21938119 - 21938031
Alignment:
Q  204 gataaataatttggttgattgaatttgcagtgtttgataaaattaactctttaactagcttataaatattatgaaatgacataaaaatatgt 295  Q
    ||||||||| || ||||||||||||||||||||||  ||||||||||  || || || ||||||||   ||| |||||||||||||| ||||    
T  21938119 gataaataaattagttgattgaatttgcagtgtttagtaaaattaacggttgaaatatcttataaa---tataaaatgacataaaaaaatgt 21938031  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 27863947 - 27863906
Alignment:
Q  207 aaataatttggttgattgaatttgcagtgtttgataaaatta 248  Q
    ||||||||| | |||||||||||| |||||||||||||||||    
T  27863947 aaataatttagctgattgaatttgtagtgtttgataaaatta 27863906  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 29052762 - 29052691
Alignment:
Q  219 tgattgaatttgcagtgtttgataaaattaactctttaactagcttataaatattatgaaatgacataaaaatat 293  Q
    ||||||||||||||||||||| |||||| | |  || | ||||||||||||   |||||||||||||||||||||    
T  29052762 tgattgaatttgcagtgtttggtaaaataagcggttcacctagcttataaa---tatgaaatgacataaaaatat 29052691  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 2748289 - 2748342
Alignment:
Q  219 tgattgaatttgcagtgtttgataaaattaactctttaactagcttataaatat 272  Q
    ||||||||||| |||||||| |||||||||||  || |||||| ||||||||||    
T  2748289 tgattgaatttacagtgtttaataaaattaacggttgaactagtttataaatat 2748342  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 3161054 - 3160987
Alignment:
Q  219 tgattgaatttgcagtgtttgataaaattaactctttaactagcttataaatattatgaaatgacataaaa 289  Q
    |||||||||||| |||||||| ||||||||||  || ||||||| ||||||   |||||||||||||||||    
T  3161054 tgattgaatttgtagtgtttggtaaaattaacgtttgaactagcatataaa---tatgaaatgacataaaa 3160987  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 290
Target Start/End: Original strand, 1714040 - 1714108
Alignment:
Q  219 tgattgaatttgcagtgtttgataaaattaactctttaactagcttataaatattatgaaatgacataaaaa 290  Q
    |||||||||||| |||||||| ||||||||||  || || ||| |||||||   ||||||||||||||||||    
T  1714040 tgattgaatttgtagtgtttggtaaaattaaccgttgaagtagtttataaa---tatgaaatgacataaaaa 1714108  T

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Target: scaffold0010 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 291
Target Start/End: Complemental strand, 166804 - 166735
Alignment:
Q  219 tgattgaatttgcagtgtttgataaaattaactctttaactagcttataaatattatgaaatgacataaaaat 291  Q
    |||||||||||| |||||||| |||||||| |  || ||||||||||||||   |||||||||||||| ||||    
T  166804 tgattgaatttgtagtgtttggtaaaattagcggttgaactagcttataaa---tatgaaatgacatagaaat 166735  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 31627690 - 31627640
Alignment:
Q  222 ttgaatttgcagtgtttgataaaattaactctttaactagcttataaatat 272  Q
    ||||||||| |||||||||||||||||||  || ||||| |||||||||||    
T  31627690 ttgaatttgtagtgtttgataaaattaaccgttgaactaacttataaatat 31627640  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 41892771 - 41892824
Alignment:
Q  219 tgattgaatttgcagtgtttgataaaattaactctttaactagcttataaatat 272  Q
    |||||||||||| |||||||| || |||||||  || |||||||||||||||||    
T  41892771 tgattgaatttgtagtgtttggtataattaacggttaaactagcttataaatat 41892824  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 33890333 - 33890281
Alignment:
Q  220 gattgaatttgcagtgtttgataaaattaactctttaactagcttataaatat 272  Q
    |||| |||||| | |||||||||||||||||| || ||||| |||||||||||    
T  33890333 gattaaatttgtaatgtttgataaaattaactgttgaactatcttataaatat 33890281  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 39033701 - 39033634
Alignment:
Q  219 tgattgaatttgcagtgtttgataaaattaactctttaactagcttataaatattatgaaatgacataaaa 289  Q
    |||||||||||| ||||||||||||||||| |  || ||||| |||| |||   |||||||||||||||||    
T  39033701 tgattgaatttgtagtgtttgataaaattatcggttaaactaacttaaaaa---tatgaaatgacataaaa 39033634  T

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