View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8390_high_1 (Length: 653)
Name: NF8390_high_1
Description: NF8390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8390_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 77 - 636
Target Start/End: Original strand, 37194748 - 37195315
Alignment:
| Q |
77 |
gggtcaaacagcgtagtggctaaaattcactttataagatgaataaatatggtattatgagatcgaaccccgaccctgcatataacaatgcattattcta |
176 |
Q |
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||||||||||||||||| ||||||||||| | |||||||||| | |||| |||||||||||||||||||||| |||| |||||||||||||| |
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| T |
37194748 |
gggtcaaacagcgtagttgctaaaattca--------ggtgaataaataggatattctgagatcgaaccccgaccctgccgataagaatgcattattcta |
37194839 |
T |
|
| Q |
177 |
aatcaatgtattgtcctaccaacgg---atatatagagagtatgcatgttctctgaatcaacgctcgattacactacctaaaataattaaaatcgcgcca |
273 |
Q |
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|||||||| |||||||||||||| | | ||| | || | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37194840 |
aatcaatgcattgtcctaccaactataaacagatatacaggagacatgttctctaaatcaacgctcgattacactacctaaaataattaaaatcgcgcca |
37194939 |
T |
|
| Q |
274 |
taattagttatcactgcaaacattnnnnnnn-tctacaccttaaactttccactatgtcgatgtccatgtctattatccacaaccttaannnnnnnnnnn |
372 |
Q |
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| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37194940 |
ttattagttatcactgcaaacattaaaaaaaatctacaccttaaactttccactatgtcgatgtccatgtctattatccacaaccttaaacccaccacca |
37195039 |
T |
|
| Q |
373 |
nnnnnnnnttactctccccctccatttcttcaccattcccattaccatc------------atcatcttttaaaccacccatcttttgctccaatccttc |
460 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37195040 |
ccaccaccttactctccccctccatttcttcaccattcccattaccatcatcatcatcatcatcatcttttaaaccacccatcttttgctccaatccttc |
37195139 |
T |
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| Q |
461 |
aaatctctctcgaagactcttccttccttctgtttcgggtatctgggacgccatcaccggcggcagcggcaataacaacaccaatgaagcccttctcgca |
560 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37195140 |
aaatctctctcgaagactcttccttccttctgtttccggtatctgggacgccatcaccggcggcagcggcaataacaacaccaatgaagcccttctcgca |
37195239 |
T |
|
| Q |
561 |
attcgacgcggaatgtctctcttcagacaggtacacaacgtttcttttcaatatctttaatggtgagttgtaacta |
636 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37195240 |
attcgacgcggaatgtctctcttcagacaggtacacaacgtttcttttcaatatctttaatggtgagttgtaacta |
37195315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 47996373 - 47996316
Alignment:
| Q |
1 |
tacactcttgatcttgataatcgatcaaattattctagcacgtgcattctcactcacc |
58 |
Q |
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||||||||||||||||||||||| ||||||||||| |||| |||||| |||||||||| |
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| T |
47996373 |
tacactcttgatcttgataatcgctcaaattattccagcaagtgcatgctcactcacc |
47996316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 124
Target Start/End: Complemental strand, 22043131 - 22043097
Alignment:
| Q |
90 |
tagtggctaaaattcactttataagatgaataaat |
124 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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|
| T |
22043131 |
tagtggctaaaattcactttataagatgaataaat |
22043097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 27907885 - 27907917
Alignment:
| Q |
90 |
tagtggctaaaattcactttataagatgaataa |
122 |
Q |
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||||||||||||||||| ||||||||||||||| |
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| T |
27907885 |
tagtggctaaaattcaccttataagatgaataa |
27907917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 139 - 169
Target Start/End: Original strand, 42553179 - 42553209
Alignment:
| Q |
139 |
tcgaaccccgaccctgcatataacaatgcat |
169 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
42553179 |
tcgaaccccgaccctgcatataacaatgcat |
42553209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 170
Target Start/End: Complemental strand, 6652315 - 6652235
Alignment:
| Q |
90 |
tagtggctaaaattcactttataagatgaataaatatggtattatgagatcgaaccccgaccctgcatataacaatgcatt |
170 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||| ||| | ||| |||||||| |||||||||| || |||||||| |
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| T |
6652315 |
tagtggctataattcactttataaggtgaataaatggggtgtctggagttcgaaccctaaccctgcataaaataatgcatt |
6652235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 122
Target Start/End: Complemental strand, 34365841 - 34365809
Alignment:
| Q |
90 |
tagtggctaaaattcactttataagatgaataa |
122 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |
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| T |
34365841 |
tagtggctagaattcactttataagatgaataa |
34365809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 21476070 - 21476102
Alignment:
| Q |
90 |
tagtggctaaaattcactttataagatgaataa |
122 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |
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|
| T |
21476070 |
tagtggctagaattcactttataagatgaataa |
21476102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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