View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8390_high_4 (Length: 399)

Name: NF8390_high_4
Description: NF8390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8390_high_4
NF8390_high_4
[»] chr7 (15 HSPs)
chr7 (101-379)||(23843999-23844278)
chr7 (132-385)||(23840583-23840836)
chr7 (135-372)||(23861237-23861474)
chr7 (135-318)||(23864831-23865014)
chr7 (135-378)||(23857268-23857511)
chr7 (135-315)||(23817442-23817622)
chr7 (135-331)||(23852889-23853085)
chr7 (135-315)||(23791695-23791875)
chr7 (135-315)||(23802490-23802670)
chr7 (135-331)||(23849018-23849214)
chr7 (135-321)||(23838020-23838206)
chr7 (135-312)||(23807958-23808135)
chr7 (135-299)||(23828102-23828266)
chr7 (135-331)||(23855264-23855460)
chr7 (191-317)||(23797966-23798092)


Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 101 - 379
Target Start/End: Original strand, 23843999 - 23844278
Alignment:
Q  101 ataattggtaagactaaaaaat-ttaaagagtaagttaccttgtcatcgatgaatttcgaccaaaatcgagccaacgctctttggtgtggttcagatggc 199  Q
    ||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||    
T  23843999 ataattgataagaataaaaaatcttaaagaggaagttaccttgtcatcgatgaattttgaccaaaatcgagccaaggctctttggtgtggatcagaaggc 23844098  T
Q  200 aaaatggggttttgcttccaaacctcatcaatgtactcaagaatcacaagggattctgatataggcttctcattgtgaacaaaaactggaaccttcttat 299  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23844099 aaaatagggttttgcttccaaacctcatcaatgtactcaagaatcacaagggattctgatataggtttctcattgtgaacaaaaactggaaccttcttat 23844198  T
Q  300 gaactggattgtatttgagaagttgttcactcttggtggctaaattttcttcaacaaattcatattcaattcccttcaac 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23844199 gaactggattgtatttgagaagttgttcactcttggtggctaaattttcttcaacaaattcatattcaattcccttcaac 23844278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 132 - 385
Target Start/End: Original strand, 23840583 - 23840836
Alignment:
Q  132 aagttaccttgtcatcgatgaatttcgaccaaaatcgagccaacgctctttggtgtggttcagatggcaaaatggggttttgcttccaaacctcatcaat 231  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  23840583 aagttaccttgtcatcgatgaatttcgaccaaaatcgagccaaggctctttggtgtggatcagttggcaaaatggggttttgcttccaaacctcatcaat 23840682  T
Q  232 gtactcaagaatcacaagggattctgatataggcttctcattgtgaacaaaaactggaaccttcttatgaactggattgtatttgagaagttgttcactc 331  Q
    |||||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||  ||||||||    
T  23840683 gtactcaagaatcacaagagattctgaaatgggcttatcattgtgaacaaaaactggaaccttcttatgaactggattatatttaagaagaagttcactc 23840782  T
Q  332 ttggtggctaaattttcttcaacaaattcatattcaattcccttcaaccttaga 385  Q
    || ||||| ||||||||||||| ||||||||||||||||||||||||| |||||    
T  23840783 tttgtggccaaattttcttcaagaaattcatattcaattcccttcaactttaga 23840836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 135 - 372
Target Start/End: Original strand, 23861237 - 23861474
Alignment:
Q  135 ttaccttgtcatcgatgaatttcgaccaaaatcgagccaacgctctttggtgtggttcagatggcaaaatggggttttgcttccaaacctcatcaatgta 234  Q
    |||||||||||||||||||||||||||||||||||||||| | | |||||| ||| ||||| | ||||||||| ||||| ||||||||||||||||||||    
T  23861237 ttaccttgtcatcgatgaatttcgaccaaaatcgagccaatgatttttggtatggatcagacgacaaaatgggattttgtttccaaacctcatcaatgta 23861336  T
Q  235 ctcaagaatcacaagggattctgatataggcttctcattgtgaacaaaaactggaaccttcttatgaactggattgtatttgagaagttgttcactcttg 334  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||  ||||||||||| |||||||||||||| ||  | ||||| |||    
T  23861337 ctcaagaatcacaagggattctgatatcggcttctcattgtgaacaagaactggaattttcttatgaaccggattgtatttgaggagaagatcacttttg 23861436  T
Q  335 gtggctaaattttcttcaacaaattcatattcaattcc 372  Q
     | |  || | ||||| ||||||||| |||||||||||    
T  23861437 tttgtcaagtcttctttaacaaattcgtattcaattcc 23861474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 135 - 318
Target Start/End: Original strand, 23864831 - 23865014
Alignment:
Q  135 ttaccttgtcatcgatgaatttcgaccaaaatcgagccaacgctctttggtgtggttcagatggcaaaatggggttttgcttccaaacctcatcaatgta 234  Q
    ||||||||||||||||||| || ||||||||||||||||| | | |||||| ||| || || || |||||||| ||||| ||||||||||||||||| ||    
T  23864831 ttaccttgtcatcgatgaacttggaccaaaatcgagccaatgatttttggtatggatcggacggtaaaatgggattttgtttccaaacctcatcaatata 23864930  T
Q  235 ctcaagaatcacaagggattctgatataggcttctcattgtgaacaaaaactggaaccttcttatgaactggattgtatttgag 318  Q
    || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23864931 ctgaagaatcacaagagattctgatataggcttctcattgtgaacaaaaactggaaccttcttatgaactggattgtatatgag 23865014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 135 - 378
Target Start/End: Original strand, 23857268 - 23857511
Alignment:
Q  135 ttaccttgtcatcgatgaatttcgaccaaaatcgagccaacgctctttggtgtggttcagatggcaaaatggggttttgcttccaaacctcatcaatgta 234  Q
    |||||||||| |||||||| || ||||||||||||||||| |||||||||| ||| ||||| ||||| || || ||||| ||||||  ||||||||| ||    
T  23857268 ttaccttgtcgtcgatgaagttagaccaaaatcgagccaaggctctttggtatggatcagaaggcaagataggattttgtttccaagtctcatcaatata 23857367  T
Q  235 ctcaagaatcacaagggattctgatataggcttctcattgtgaacaaaaactggaaccttcttatgaactggattgtatttgagaagttgttcactcttg 334  Q
    ||||| ||||| |||||| |||||||||||||| |||||||||||||||||||| | ||| |||| ||||||||| || ||||||||  ||||||| |||    
T  23857368 ctcaataatcaaaagggactctgatataggcttttcattgtgaacaaaaactggtatctttttataaactggattatacttgagaagaagttcacttttg 23857467  T
Q  335 gtggctaaattttcttcaacaaattcatattcaattcccttcaa 378  Q
     |||| |  |||||||||| |||||  |||||||||||||||||    
T  23857468 ttggccatgttttcttcaagaaatttgtattcaattcccttcaa 23857511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 135 - 315
Target Start/End: Original strand, 23817442 - 23817622
Alignment:
Q  135 ttaccttgtcatcgatgaatttcgaccaaaatcgagccaacgctctttggtgtggttcagatggcaaaatggggttttgcttccaaacctcatcaatgta 234  Q
    ||||||||||||| ||||  || |||||||||||| |||| |||||||||| ||| ||||| ||||| || || ||||| ||||||  ||||||||| ||    
T  23817442 ttaccttgtcatctatgaggttggaccaaaatcgaaccaaggctctttggtatggatcagaaggcaatattggattttgtttccaagtctcatcaatata 23817541  T
Q  235 ctcaagaatcacaagggattctgatataggcttctcattgtgaacaaaaactggaaccttcttatgaactggattgtattt 315  Q
     |||||||||||||| || |||| ||||||||| ||||| |||| |||||| ||||||||||||| ||| || ||||||||    
T  23817542 ttcaagaatcacaagtgactctgctataggcttatcattatgaataaaaacaggaaccttcttataaacagggttgtattt 23817622  T

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Target: chr7; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 135 - 331
Target Start/End: Complemental strand, 23853085 - 23852889
Alignment:
Q  135 ttaccttgtcatcgatgaatttcgaccaaaatcgagccaacgctctttggtgtggttcagatggcaaaatggggttttgcttccaaacctcatcaatgta 234  Q
    ||||||||||||| ||||| || |||||||| ||  |||| |||||||| |  || |||   ||||| || |||||||| |||||| |||||||||| ||    
T  23853085 ttaccttgtcatcaatgaacttagaccaaaaacggtccaaggctctttgataaggatcattgggcaagatagggttttgtttccaagcctcatcaatata 23852986  T
Q  235 ctcaagaatcacaagggattctgatataggcttctcattgtgaacaaaaactggaaccttcttatgaactggattgtatttgagaagttgttcactc 331  Q
    ||||||||||||| | |||||||| ||||||||| |||| ||||||| |||||||||| |||| | |||||||||||| |||||||||  |||||||    
T  23852985 ctcaagaatcacacgtgattctgaaataggcttcccattatgaacaagaactggaaccatcttgtaaactggattgtaattgagaagtgtttcactc 23852889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 135 - 315
Target Start/End: Original strand, 23791695 - 23791875
Alignment:
Q  135 ttaccttgtcatcgatgaatttcgaccaaaatcgagccaacgctctttggtgtggttcagatggcaaaatggggttttgcttccaaacctcatcaatgta 234  Q
    ||||||| ||||| ||||| || | ||| || |||||||| ||||||| ||  || ||||| ||||| || || ||||| ||||||  ||||||||| ||    
T  23791695 ttaccttatcatctatgaacttggtccagaaacgagccaaggctctttcgtaaggatcagaaggcaagataggattttgtttccaagtctcatcaatata 23791794  T
Q  235 ctcaagaatcacaagggattctgatataggcttctcattgtgaacaaaaactggaaccttcttatgaactggattgtattt 315  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||| || || ||||||||||||| ||| || ||||||||    
T  23791795 ctcaagaatcacaagggattctgatatgggcttatcattatgaactaacacaggaaccttcttataaacagggttgtattt 23791875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 135 - 315
Target Start/End: Original strand, 23802490 - 23802670
Alignment:
Q  135 ttaccttgtcatcgatgaatttcgaccaaaatcgagccaacgctctttggtgtggttcagatggcaaaatggggttttgcttccaaacctcatcaatgta 234  Q
    ||||||| ||||| ||||| || ||||| || |||||||| ||||||| |   || ||||| ||||| ||||| ||||| ||||||  ||||||||| ||    
T  23802490 ttaccttatcatcaatgaaattggaccagaaacgagccaaggctcttttggaaggatcagaaggcaatatgggattttgtttccaagtctcatcaatata 23802589  T
Q  235 ctcaagaatcacaagggattctgatataggcttctcattgtgaacaaaaactggaaccttcttatgaactggattgtattt 315  Q
     ||||||||||||||||| |||||||| ||||| ||||| |||| |||||| ||||| ||||||| ||| || ||||||||    
T  23802590 ttcaagaatcacaagggactctgatatgggcttatcattatgaataaaaacaggaactttcttataaacagggttgtattt 23802670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 135 - 331
Target Start/End: Complemental strand, 23849214 - 23849018
Alignment:
Q  135 ttaccttgtcatcgatgaatttcgaccaaaatcgagccaacgctctttggtgtggttcagatggcaaaatggggttttgcttccaaacctcatcaatgta 234  Q
    ||||||| ||||| ||||| || |||||||| ||| |||| ||||||| ||  || ||||| ||||| || ||||| || |||||| |||| ||||| ||    
T  23849214 ttaccttttcatcaatgaactttgaccaaaaccgatccaaagctcttttgtaaggatcagaaggcaagatagggttctgtttccaagcctcgtcaatata 23849115  T
Q  235 ctcaagaatcacaagggattctgatataggcttctcattgtgaacaaaaactggaaccttcttatgaactggattgtatttgagaagttgttcactc 331  Q
    ||||| ||||||| | ||||||||||| || ||| |||| ||||||| ||| |||||| || ||| ||||||||| ||||||||||||  |||||||    
T  23849114 ctcaataatcacacgagattctgatatgggattcccattatgaacaagaacaggaaccatcctataaactggattatatttgagaagtgtttcactc 23849018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 135 - 321
Target Start/End: Complemental strand, 23838206 - 23838020
Alignment:
Q  135 ttaccttgtcatcgatgaatttcgaccaaaatcgagccaacgctctttggtgtggttcagatggcaaaatggggttttgcttccaaacctcatcaatgta 234  Q
    ||||||||||||| ||||| || ||||| || |||||||| |||||||| |  || ||||| ||||| || || ||||| ||||||  |||||| |||||    
T  23838206 ttaccttgtcatcaatgaacttagaccagaaacgagccaaggctctttgataaggatcagaaggcaagataggattttgtttccaagtctcatcgatgta 23838107  T
Q  235 ctcaagaatcacaagggattctgatataggcttctcattgtgaacaaaaactggaaccttcttatgaactggattgtatttgagaag 321  Q
    ||||||||||||| | || ||||| || || ||  |||| ||||||||||| |||||| || | | |||||||||||||||||||||    
T  23838106 ctcaagaatcacacgagactctgagatgggatttccattatgaacaaaaacaggaaccatcctgtaaactggattgtatttgagaag 23838020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 135 - 312
Target Start/End: Original strand, 23807958 - 23808135
Alignment:
Q  135 ttaccttgtcatcgatgaatttcgaccaaaatcgagccaacgctctttggtgtggttcagatggcaaaatggggttttgcttccaaacctcatcaatgta 234  Q
    ||||||||||||| ||||| || ||||| || |||||||  |||||||| |  || ||||| ||||| || |||||||| ||||||  ||||||||| ||    
T  23807958 ttaccttgtcatcaatgaaattggaccagaaacgagccatggctctttgataaggatcagaaggcaagatagggttttgtttccaagtctcatcaatata 23808057  T
Q  235 ctcaagaatcacaagggattctgatataggcttctcattgtgaacaaaaactggaaccttcttatgaactggattgta 312  Q
    ||||||||||||||| ||||| || || ||||| ||||| | ||| ||||| ||||| ||||||| ||| || |||||    
T  23808058 ctcaagaatcacaagtgattcagagatgggcttgtcattataaactaaaacaggaactttcttataaacagggttgta 23808135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 135 - 299
Target Start/End: Original strand, 23828102 - 23828266
Alignment:
Q  135 ttaccttgtcatcgatgaatttcgaccaaaatcgagccaacgctctttggtgtggttcagatggcaaaatggggttttgcttccaaacctcatcaatgta 234  Q
    ||||||| ||||| ||||| || | ||| || |||||||| ||||||| ||  || ||||| || || || || ||||||||||||   |||||||  ||    
T  23828102 ttaccttatcatctatgaactttgtccagaaacgagccaaggctcttttgtaaggatcagaaggtaagataggattttgcttccaagtttcatcaacata 23828201  T
Q  235 ctcaagaatcacaagggattctgatataggcttctcattgtgaacaaaaactggaaccttcttat 299  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||| || || |||||||| ||||    
T  23828202 ctcaagaatcacaagggattctgatatgggcttatcattatgaactaatacaggaacctttttat 23828266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 135 - 331
Target Start/End: Complemental strand, 23855460 - 23855264
Alignment:
Q  135 ttaccttgtcatcgatgaatttcgaccaaaatcgagccaacgctctttggtgtggttcagatggcaaaatggggttttgcttccaaacctcatcaatgta 234  Q
    ||||||| ||||| | ||| || | |||||| ||| |||| ||||||| ||  || ||||| ||||| || |||||||| ||||||  ||||||||| ||    
T  23855460 ttaccttctcatctaggaacttggcccaaaagcgatccaaggctcttttgtaaggatcagaaggcaagatagggttttgtttccaagtctcatcaatata 23855361  T
Q  235 ctcaagaatcacaagggattctgatataggcttctcattgtgaacaaaaactggaaccttcttatgaactggattgtatttgagaagttgttcactc 331  Q
    ||||||||||||| | || ||||| |  ||||||||||||||||||| ||| |||||| |||| | ||  || |||||| ||||||||  |||||||    
T  23855360 ctcaagaatcacacgagactctgaaacgggcttctcattgtgaacaagaacaggaaccatcttgtaaatagggttgtatctgagaagtgtttcactc 23855264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 317
Target Start/End: Original strand, 23797966 - 23798092
Alignment:
Q  191 tcagatggcaaaatggggttttgcttccaaacctcatcaatgtactcaagaatcacaagggattctgatataggcttctcattgtgaacaaaaactggaa 290  Q
    ||||| ||||| || || ||||| ||||||  ||||||||| || |||| ||||||||| ||||||| ||||||||| ||||| ||||| || || ||||    
T  23797966 tcagaaggcaagataggattttgtttccaagtctcatcaatatattcaataatcacaagagattctgctataggcttatcattatgaactaatacaggaa 23798065  T
Q  291 ccttcttatgaactggattgtatttga 317  Q
    ||||||||| ||| || ||||| ||||    
T  23798066 ccttcttataaacagggttgtaattga 23798092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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