View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8390_high_5 (Length: 376)
Name: NF8390_high_5
Description: NF8390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8390_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 13 - 359
Target Start/End: Original strand, 44739363 - 44739710
Alignment:
| Q |
13 |
agaagaagaatatgaggatgaaattgattagacgttgtaattgtgtcacgtagttactcgtgttagccatccaatttaaaatcaacagctgagattgtta |
112 |
Q |
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| T |
44739363 |
agaagaagaatatgaggatgaaattgattagacgttgtaattgtgtcacgtagttactcgtgttagccatccaatttaaaatcaacagctgagattgtta |
44739462 |
T |
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| Q |
113 |
gcatgtaaatatgaaccgtctgatttactagtagtagttagtgcatacttatggtgtacaaaagcattttccttattttaatttgtgcatataagtagca |
212 |
Q |
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| T |
44739463 |
gcatgtaaatatgaaccgtctgatttactagtagtagttagtgcatacttatggtgtacaaaagcattttccttattttaatttgtgcatataagtagcg |
44739562 |
T |
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| Q |
213 |
atagcagcgtgctttacatagacgtaagcactaagcacacggctgattaaaacaacacagaatttggcgtactacgaaattgac-aaaaaatagtttttt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
44739563 |
gtagcagcgtgctttacatagacgtaagcactaagcacacggctgattaaaacaacacagaatttggtgtactacgaaattgacaaaaaaatagtttttt |
44739662 |
T |
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| Q |
312 |
atttaatctagtgggatgaactttttgaggcaaccataccaatgtcat |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44739663 |
atttaatctagtgggatgaactttttgaggcaaccataccaatgtcat |
44739710 |
T |
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