View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8390_low_11 (Length: 344)
Name: NF8390_low_11
Description: NF8390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8390_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 47070639 - 47070967
Alignment:
| Q |
1 |
gaaagaatcaacaatggccgtttcaaaattgaaggaggctttggtaaaaaattattgtgtgtggatcaaacaattcgtatgttaacaacgtgcaaatgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
47070639 |
gaaagaatcaacaatggccgtttcaaaattgaaggaggctttggtaaaaatttattgtgtgtggatcaaacaatttgtatgttaacaacgtgcaaatgat |
47070738 |
T |
|
| Q |
101 |
gttaactcagaggagaggtgcttatgacatgttaaattaagcaggggagatttgtgtttaagttnnnnnnntatagggagtgtcagtgacattttaacat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47070739 |
gttaactcagaggagaggtgcttatgacatgttaaattaagcaggcgagatttgtgtt-aagttaaaaaaatatagggagtgtcagtgacattttaacat |
47070837 |
T |
|
| Q |
201 |
acctcaaaaggaaggtcaatgttaattgtacatggaaattattttcaaaacataaaccaccttatttttaaaatctaaacaaacaattttcatgcatcaa |
300 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47070838 |
acctcaaaagggaggtcaatgttaattgtacatggaaattattttcaaaacataaaccaccttatttttaaaatctaaacaaacaattttcatgcatcaa |
47070937 |
T |
|
| Q |
301 |
ccggaacgaaaatctacataggcaaacact |
330 |
Q |
| |
|
||||| |||||||||||||||||||||||| |
|
|
| T |
47070938 |
ccggagcgaaaatctacataggcaaacact |
47070967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 229 - 317
Target Start/End: Complemental strand, 54859886 - 54859799
Alignment:
| Q |
229 |
tacatggaaattattttcaaaacataaaccaccttatttttaaaatctaaacaaacaattttcatgcatcaaccggaacgaaaatctac |
317 |
Q |
| |
|
||||||| |||| ||||||| |||||| || || |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
54859886 |
tacatggtaattgttttcaagacataa-ccgccgtatttttaaaatctaaacaaacaattttcatgcatcaaccagaacgaaaatctac |
54859799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 325
Target Start/End: Original strand, 19309697 - 19309745
Alignment:
| Q |
277 |
aaacaaacaattttcatgcatcaaccggaacgaaaatctacataggcaa |
325 |
Q |
| |
|
||||||||||||||||| ||||||| ||| |||||||||||||||||| |
|
|
| T |
19309697 |
aaacaaacaattttcatacatcaacaagaatgaaaatctacataggcaa |
19309745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University