View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8390_low_15 (Length: 244)
Name: NF8390_low_15
Description: NF8390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8390_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 11247634 - 11247869
Alignment:
| Q |
1 |
catcattctgatcaaccggtttatcaccacccgatacccccgccgcttctaacgcctctccgatggtgatcggatcgccatctatagccgcagagcccat |
100 |
Q |
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| T |
11247634 |
catcattctgatccaccggtttatcaccaaccgatatccctgcagcttctaacgcctctccgatggtgatcggatcgccatctatagccgcagagcccat |
11247733 |
T |
|
| Q |
101 |
attcataggcacaaagtgcgcgtcaggctccacgcgccgtcctataatctgaccatcaaccgcctccgtcacaacacgacggtcagcagccgttgtttcc |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11247734 |
attcataggcacaaagtgcgcatcaggctccacgcgccgccctataatctgaccatcaaccgcctccgtcacaacacgacggttagcagccgttgtttcc |
11247833 |
T |
|
| Q |
201 |
gtcacacgaataccatgatctttgaccatctctgct |
236 |
Q |
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||||||||||||||||||||||||||||| |||||| |
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| T |
11247834 |
gtcacacgaataccatgatctttgaccatttctgct |
11247869 |
T |
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