View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8390_low_18 (Length: 238)
Name: NF8390_low_18
Description: NF8390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8390_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 39791972 - 39791764
Alignment:
| Q |
9 |
aatgtatccaaaattgtgctttaatattgtcatattagtcctttaatataattgtccactgttatatcaaagactattttggaatttcagtacattgaga |
108 |
Q |
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| T |
39791972 |
aatgtatccaaaattgtgctttaatattgtcatattagtcctttaatatacttgtccactgttatatcaaagactattttggaatttcaatacattgaga |
39791873 |
T |
|
| Q |
109 |
gactattgtggttacctgttagttgttacacattcaggacgaaaatgactatttgcccaaaaatcaattgtgaaagattctaacaattttatgatttgag |
208 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39791872 |
gactattgtggttacct-------gttacacattcaggacgaaaatgactatttgcccaaaaatcaattgtgaaagattctaacaattttatgatttgag |
39791780 |
T |
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| Q |
209 |
gtcttatggagctttt |
224 |
Q |
| |
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|||||||||||||||| |
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| T |
39791779 |
gtcttatggagctttt |
39791764 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 10067745 - 10067800
Alignment:
| Q |
74 |
atcaaagactattttggaatttcagtacattgagagactattgtggttacctgtta |
129 |
Q |
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| T |
10067745 |
atcagagactattttaaaatttcgatacattgagagactattgtggttacttgtta |
10067800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 5727303 - 5727254
Alignment:
| Q |
74 |
atcaaagactattttggaatttcagtacattgagagactattgtggttac |
123 |
Q |
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| T |
5727303 |
atcagagattattttggaatttcggtacattgagggactagtgtggttac |
5727254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 18129979 - 18130011
Alignment:
| Q |
30 |
taatattgtcatattagtcctttaatataattg |
62 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
18129979 |
taatattgtcatattagtccttcaatataattg |
18130011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 23887621 - 23887653
Alignment:
| Q |
30 |
taatattgtcatattagtcctttaatataattg |
62 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
23887621 |
taatattgtcatattagtccttcaatataattg |
23887653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 47097460 - 47097431
Alignment:
| Q |
29 |
ttaatattgtcatattagtcctttaatata |
58 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
47097460 |
ttaatattgtcatattagtcctttaatata |
47097431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 13242544 - 13242572
Alignment:
| Q |
29 |
ttaatattgtcatattagtcctttaatat |
57 |
Q |
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||||||||||||||||||||||||||||| |
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|
| T |
13242544 |
ttaatattgtcatattagtcctttaatat |
13242572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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