View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8390_low_2 (Length: 559)
Name: NF8390_low_2
Description: NF8390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8390_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 40001599 - 40001332
Alignment:
| Q |
1 |
gtggtggtgtttccaagaaggaaaccaatcggcggattgggtcattgggattgtatagagagattttgttgtgttgggcatatgggactccatgtgctca |
100 |
Q |
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| T |
40001599 |
gtggtggtgtttccaagaaggaaaccaatcggcggattgggtcattgggattgtatagagagattttgttgtgttgggcatatgggactccatgtgctca |
40001500 |
T |
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| Q |
101 |
gtcccactcggatccctttgtttttgtcacattcacacactacatcacacatacactcccactccctttttattttattc-tacaccattcagttttccc |
199 |
Q |
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| T |
40001499 |
gtcccactcggatccctttgtttttgtcacattcacacactacatcacacatacactcccactccctttttattttattcatacaccattcagttttccc |
40001400 |
T |
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| Q |
200 |
aatacactattttaaaatagggttttgttaacgagtgtctttagtgttaagagcactcgttaaaggat |
267 |
Q |
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| T |
40001399 |
aatacactattttaaaataggattttgttaacgagtgtccttgatgttaagggcattcgttaaaggat |
40001332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 352 - 538
Target Start/End: Complemental strand, 40001191 - 40001004
Alignment:
| Q |
352 |
atgctaattgggttccgtaccaacatttcttgtacgaaattggatcaaattcttatactatcatactatactatgggacctttatt-atatactcttata |
450 |
Q |
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| T |
40001191 |
atgctaattgggatccgtaccaacatttcttgtacgaaattggatcaaattcttatactatcatactatactatgggacctttatttatatactcttata |
40001092 |
T |
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| Q |
451 |
attgaagaaagagcttatacatatatataattccaatatatcaaagatctaatcttattgcaaatgtgtggacatcctacctgagtgt |
538 |
Q |
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| T |
40001091 |
attgaagaaagagcttatacatatatataattccaatatatcaaagatctaatcttattgcaaatgtgtggacatcctacctgagtgt |
40001004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 301 - 334
Target Start/End: Complemental strand, 40001241 - 40001208
Alignment:
| Q |
301 |
ttaacatttccctttaaaatagagtaataaatac |
334 |
Q |
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| T |
40001241 |
ttaacatttccctttaaaatagagtaataaatac |
40001208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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