View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8390_low_3 (Length: 426)

Name: NF8390_low_3
Description: NF8390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8390_low_3
NF8390_low_3
[»] chr8 (4 HSPs)
chr8 (173-301)||(10637315-10637443)
chr8 (173-301)||(32718151-32718279)
chr8 (11-112)||(10637504-10637605)
chr8 (11-112)||(32717989-32718090)
[»] scaffold0586 (2 HSPs)
scaffold0586 (173-301)||(9285-9413)
scaffold0586 (13-112)||(9474-9573)
[»] chr6 (3 HSPs)
chr6 (173-301)||(19700854-19700982)
chr6 (11-111)||(19701042-19701142)
chr6 (208-301)||(21481105-21481198)
[»] chr1 (3 HSPs)
chr1 (173-301)||(22893471-22893598)
chr1 (11-112)||(22893659-22893760)
chr1 (179-273)||(44305833-44305927)
[»] scaffold0048 (1 HSPs)
scaffold0048 (304-425)||(79148-79267)
[»] chr7 (3 HSPs)
chr7 (25-108)||(13331710-13331792)
chr7 (25-108)||(13342625-13342707)
chr7 (198-273)||(13331882-13331957)
[»] chr5 (2 HSPs)
chr5 (25-108)||(5672181-5672263)
chr5 (180-273)||(5672335-5672428)
[»] chr2 (3 HSPs)
chr2 (180-298)||(26661190-26661308)
chr2 (179-273)||(6049616-6049710)
chr2 (63-109)||(6049769-6049815)
[»] chr3 (2 HSPs)
chr3 (180-267)||(15762307-15762394)
chr3 (31-108)||(15762160-15762236)
[»] scaffold0500 (1 HSPs)
scaffold0500 (231-301)||(366-436)
[»] chr4 (1 HSPs)
chr4 (179-273)||(13894006-13894100)


Alignment Details
Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 173 - 301
Target Start/End: Complemental strand, 10637443 - 10637315
Alignment:
Q  173 tagatggctttcttgggaaaattgcattcctggacatatttgtgtggttcccacttatcaaacaaaggaatgtttaattccaaccttagattccttggaa 272  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10637443 tagatggctttcctgggaaaattgcattcctggacatatttgtgtggttcccacttaccaaacaaaggaatgtttaattccaaccttagattccttggaa 10637344  T
Q  273 ttattattactaccctcaaacaaacaccc 301  Q
    ||||| |||||||||||||||||||||||    
T  10637343 ttatttttactaccctcaaacaaacaccc 10637315  T

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Target: chr8; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 173 - 301
Target Start/End: Original strand, 32718151 - 32718279
Alignment:
Q  173 tagatggctttcttgggaaaattgcattcctggacatatttgtgtggttcccacttatcaaacaaaggaatgtttaattccaaccttagattccttggaa 272  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32718151 tagatggctttcctgggaaaattgcattcctagacatatttgtgtggttcccacttaccaaacaaaggaatgtttaattccaaccttagattccttggaa 32718250  T
Q  273 ttattattactaccctcaaacaaacaccc 301  Q
    ||||| |||||||||||||||||||||||    
T  32718251 ttatttttactaccctcaaacaaacaccc 32718279  T

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Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 10637605 - 10637504
Alignment:
Q  11 agcagagaaaaatttagcgggaatggcaagggcaaatatggtattttattcaagatcctgggtatccatttcctgggaataaaactttcccaagctatct 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||    
T  10637605 agcagagaaaaatttagcgggaatggcaagggcaaatatggtattttattcaagttcatgggtttccatttcctgggaataaaactttcccaagctatct 10637506  T
Q  111 ca 112  Q
    ||    
T  10637505 ca 10637504  T

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Target: chr8; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 32717989 - 32718090
Alignment:
Q  11 agcagagaaaaatttagcgggaatggcaagggcaaatatggtattttattcaagatcctgggtatccatttcctgggaataaaactttcccaagctatct 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||    
T  32717989 agcagagaaaaatttagcgggaatggcaagggcaaatatggtattttattcaagatcatgggtttccatttcctgggaataaaactttcccaagccatct 32718088  T
Q  111 ca 112  Q
    ||    
T  32718089 ca 32718090  T

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Target: scaffold0586 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 173 - 301
Target Start/End: Complemental strand, 9413 - 9285
Alignment:
Q  173 tagatggctttcttgggaaaattgcattcctggacatatttgtgtggttcccacttatcaaacaaaggaatgtttaattccaaccttagattccttggaa 272  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||    
T  9413 tagatggctttcctgggaaaattgcattcctggacatatttgtgtggttcccacctaccaaacaaaggaatgtttaattccaaccttagattccttgaaa 9314  T
Q  273 ttattattactaccctcaaacaaacaccc 301  Q
    ||||| |||||||||||||||||||||||    
T  9313 ttatttttactaccctcaaacaaacaccc 9285  T

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Target: scaffold0586; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 9573 - 9474
Alignment:
Q  13 cagagaaaaatttagcgggaatggcaagggcaaatatggtattttattcaagatcctgggtatccatttcctgggaataaaactttcccaagctatctca 112  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  9573 cagagaaaaatttagcgggaatggcaagggaaaatatggtattttattcaagatcatgggtttccatttcctgggaataaaactttcccaagctatctca 9474  T

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Target: chr6 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 173 - 301
Target Start/End: Complemental strand, 19700982 - 19700854
Alignment:
Q  173 tagatggctttcttgggaaaattgcattcctggacatatttgtgtggttcccacttatcaaacaaaggaatgtttaattccaaccttagattccttggaa 272  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  19700982 tagatggctttcctgggaaaattgtattcctggacatatttgtgtggttcccacttaccaaacaaaggaatgtttaattccagccttagattccttggaa 19700883  T
Q  273 ttattattactaccctcaaacaaacaccc 301  Q
    ||||| ||| |||||||||||||||||||    
T  19700882 ttatttttattaccctcaaacaaacaccc 19700854  T

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Target: chr6; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 19701142 - 19701042
Alignment:
Q  11 agcagagaaaaatttagcgggaatggcaagggcaaatatggtattttattcaagatcctgggtatccatttcctgggaataaaactttcccaagctatct 110  Q
    ||||||||||||||||| | |||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  19701142 agcagagaaaaatttagtgagaatggcaagggaaaatatggtattttattcaagatcatgggtttccatttcctgggaataaaactttcccaagctatct 19701043  T
Q  111 c 111  Q
    |    
T  19701042 c 19701042  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 301
Target Start/End: Complemental strand, 21481198 - 21481105
Alignment:
Q  208 atatttgtgtggttcccacttatcaaacaaaggaatgtttaattccaaccttagattccttggaattattattactaccctcaaacaaacaccc 301  Q
    ||||||||||  ||||||  || ||||||||| ||| || ||||||| ||||| |||||| ||||||||| ||   ||||||||||||||||||    
T  21481198 atatttgtgttattcccatctaccaaacaaagcaatattcaattccagccttaaattcctaggaattatttttgtaaccctcaaacaaacaccc 21481105  T

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Target: chr1 (Bit Score: 101; Significance: 6e-50; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 173 - 301
Target Start/End: Complemental strand, 22893598 - 22893471
Alignment:
Q  173 tagatggctttcttgggaaaattgcattcctggacatatttgtgtggttcccacttatcaaacaaaggaatgtttaattccaaccttagattccttggaa 272  Q
    |||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22893598 tagatggctttcatgggaaa-ttgcattccttgacatatttgtgtggttcccacttaccaaacaaaggaatgtttaattccaaccttagattccttggaa 22893500  T
Q  273 ttattattactaccctcaaacaaacaccc 301  Q
    ||||| ||||||| |||||||||||||||    
T  22893499 ttatttttactactctcaaacaaacaccc 22893471  T

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Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 22893760 - 22893659
Alignment:
Q  11 agcagagaaaaatttagcgggaatggcaagggcaaatatggtattttattcaagatcctgggtatccatttcctgggaataaaactttcccaagctatct 110  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  22893760 agcagagaaaaatttagcgggaatggcaagggaaaatatggtattttattcaagatcatgggtttccatttcctgggaataaaactttcccaagctatct 22893661  T
Q  111 ca 112  Q
    ||    
T  22893660 ca 22893659  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 273
Target Start/End: Complemental strand, 44305927 - 44305833
Alignment:
Q  179 gctttcttgggaaaattgcattcctggacatatttgtgtggttcccacttatcaaacaaaggaatgtttaattccaaccttagattccttggaat 273  Q
    |||||| |||||||| || |||| | | ||||||| |||  ||||||  || ||||||||| ||| |||||||||| |||||||||||| |||||    
T  44305927 gctttcctgggaaaaatgtattcttaggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagccttagattcctaggaat 44305833  T

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Target: scaffold0048 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 304 - 425
Target Start/End: Complemental strand, 79267 - 79148
Alignment:
Q  304 taagggttattcgttaatagcgtttccgtttaatctaagtagtgcataataatagtgtttttcccaaaatgctatgtaaggatatgtagaagcgcaatgt 403  Q
    |||||||||||||||||||| ||||||||||||| |||||||| |||||||||||  ||||||||||  | ||||||||||||||||||||  |||||||    
T  79267 taagggttattcgttaatagtgtttccgtttaatttaagtagttcataataatagcatttttcccaattttctatgtaaggatatgtagaa--gcaatgt 79170  T
Q  404 ataatagtcccagttttataag 425  Q
    |||||||| |||||||||||||    
T  79169 ataatagttccagttttataag 79148  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 13331710 - 13331792
Alignment:
Q  25 tagcgggaatggcaagggcaaatatggtattttattcaagatcctgggtatccatttcctgggaataaaactttcccaagctat 108  Q
    |||||||||||||||||||||| ||||| ||||||| |||||| ||||| | || ||||||||||| |||||||||||||||||    
T  13331710 tagcgggaatggcaagggcaaaaatggttttttattgaagatcatgggt-ttcaattcctgggaatgaaactttcccaagctat 13331792  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 13342625 - 13342707
Alignment:
Q  25 tagcgggaatggcaagggcaaatatggtattttattcaagatcctgggtatccatttcctgggaataaaactttcccaagctat 108  Q
    ||||||||||| |||||||||| ||||| ||||||| |||||| ||||| | || ||||||||||| |||||||||||||||||    
T  13342625 tagcgggaatgacaagggcaaaaatggttttttattgaagatcatgggt-ttcaattcctgggaatgaaactttcccaagctat 13342707  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 273
Target Start/End: Original strand, 13331882 - 13331957
Alignment:
Q  198 attcctggacatatttgtgtggttcccacttatcaaacaaaggaatgtttaattccaaccttagattccttggaat 273  Q
    |||||||| ||| |||||||||||||||  || |||| |||| ||| || ||||||| |||||||||||| |||||    
T  13331882 attcctgggcatttttgtgtggttcccatctaccaaataaagaaatattcaattccagccttagattcctaggaat 13331957  T

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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 5672181 - 5672263
Alignment:
Q  25 tagcgggaatggcaagggcaaatatggtattttattcaagatcctgggtatccatttcctgggaataaaactttcccaagctat 108  Q
    ||||||||||| |||||||||| ||||| ||||||| |||||| ||||| | || ||||||||||| |||||||||||||||||    
T  5672181 tagcgggaatgacaagggcaaaaatggttttttattgaagatcatgggt-ttcaattcctgggaatgaaactttcccaagctat 5672263  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 273
Target Start/End: Original strand, 5672335 - 5672428
Alignment:
Q  180 ctttcttgggaaaattgcattcctggacatatttgtgtggttcccacttatcaaacaaaggaatgtttaattccaaccttagattccttggaat 273  Q
    ||||| ||| |||| || |||||||  ||| |||||||||||||||  || |||| |||| ||| || ||||||| |||||||||||| |||||    
T  5672335 ctttcctggaaaaaatgtattcctgagcatttttgtgtggttcccatctaccaaataaagaaatattcaattccagccttagattcctaggaat 5672428  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 180 - 298
Target Start/End: Complemental strand, 26661308 - 26661190
Alignment:
Q  180 ctttcttgggaaaattgcattcctggacatatttgtgtggttcccacttatcaaacaaaggaatgtttaattccaaccttagattccttggaattattat 279  Q
    ||||| |||||||| || |||||| | |||||||||||  ||||||  || ||||||||| ||| || ||||||| |||||||||||| ||||||||| |    
T  26661308 ctttcctgggaaaaatgtattccttggcatatttgtgttattcccatctaccaaacaaagcaatattcaattccagccttagattcctaggaattatttt 26661209  T
Q  280 tactaccctcaaacaaaca 298  Q
    |   |||||||||||||||    
T  26661208 tgtaaccctcaaacaaaca 26661190  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 273
Target Start/End: Complemental strand, 6049710 - 6049616
Alignment:
Q  179 gctttcttgggaaaattgcattcctggacatatttgtgtggttcccacttatcaaacaaaggaatgtttaattccaaccttagattccttggaat 273  Q
    |||||| |||||||| || |||||| | ||||||| |||  ||||||  || |||||| || ||| |||||||||| |||||||||||| |||||    
T  6049710 gctttcctgggaaaaatgtattcctaggcatatttttgtttttcccatctaccaaacatagcaatctttaattccagccttagattcctaggaat 6049616  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 6049815 - 6049769
Alignment:
Q  63 agatcctgggtatccatttcctgggaataaaactttcccaagctatc 109  Q
    ||||| ||||| | |||||||||||||||||| ||||||||||||||    
T  6049815 agatcatgggtttacatttcctgggaataaaagtttcccaagctatc 6049769  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 267
Target Start/End: Original strand, 15762307 - 15762394
Alignment:
Q  180 ctttcttgggaaaattgcattcctggacatatttgtgtggttcccacttatcaaacaaaggaatgtttaattccaaccttagattcct 267  Q
    ||||| |||||||| || |||||| | |||||||||||||| ||||| || ||||||||||||| ||  |||||| ||||||||||||    
T  15762307 ctttcctgggaaaaatgtattcctaggcatatttgtgtggtacccacctaccaaacaaaggaatattcgattccagccttagattcct 15762394  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 15762160 - 15762236
Alignment:
Q  31 gaatggcaagggcaaatatggtattttattcaagatcctgggtatccatttcctgggaataaaactttcccaagctat 108  Q
    ||||| ||||| |||| ||||||||||||| |||||| ||| | |||||| | |||||||||| ||||||||||||||    
T  15762160 gaatgacaaggacaaaaatggtattttattgaagatcatggtt-tccattccatgggaataaatctttcccaagctat 15762236  T

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Target: scaffold0500 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 301
Target Start/End: Original strand, 366 - 436
Alignment:
Q  231 caaacaaaggaatgtttaattccaaccttagattccttggaattattattactaccctcaaacaaacaccc 301  Q
    ||||||||| ||| || ||||||| |||||||||||| ||||||||| ||   ||||||||||||||||||    
T  366 caaacaaagcaatattcaattccagccttagattcctaggaattatttttgtaaccctcaaacaaacaccc 436  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 273
Target Start/End: Original strand, 13894006 - 13894100
Alignment:
Q  179 gctttcttgggaaaattgcattcctggacatatttgtgtggttcccacttatcaaacaaaggaatgtttaattccaaccttagattccttggaat 273  Q
    |||||| |||||||| || |||||| | ||||||| |||  ||||||  || ||||||||| ||| |||||||||| |||||||||||| |||||    
T  13894006 gctttcctgggaaaaatgtattcctaggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagccttagattcctaggaat 13894100  T

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