View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8390_low_5 (Length: 415)
Name: NF8390_low_5
Description: NF8390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8390_low_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 5 - 415
Target Start/End: Complemental strand, 39792632 - 39792222
Alignment:
| Q |
5 |
tgaaaagaagaagaagcaccttgaaggaagtgcttctgattttttgatctggcttgggaaaagcagcaacagtggccaataaatccaagcccactgctcc |
104 |
Q |
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| T |
39792632 |
tgaaaagaagaagaagcaccttgaaggaagtgcttctgattttttgatctggcttgggaaaagcagcaacagtggccaataaatccaagcccactgctcc |
39792533 |
T |
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| Q |
105 |
acaccccacctgcacaaacacaataatggttacttttttaagcttcaacgatgaaacgggagtgattgaatcaaagagagaacttaccacaatggaattt |
204 |
Q |
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| T |
39792532 |
acaccccacctgcacaaacacaataaaggttacttttttaagcttcaaagatgaaaagggagtgattgaatcaaagagagaacttaccacaatgaaattt |
39792433 |
T |
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| Q |
205 |
tcttgaaggaattcaccagacatagtgttcactcaaactcagtcaaacctaaagaatgtaattgtaagaaaattcttagtagcttaaagttatttttaaa |
304 |
Q |
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| T |
39792432 |
tcttgaagggattcaccagacatagtgttcactcaaactcagtcaaacctaaagaatgtaattgtaagaaaattcttagtagcttaaagttatttttaaa |
39792333 |
T |
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| Q |
305 |
ttacaaatataccctgttgtattgtacataagcaccatttttattgaattatttatgcttatcacacattatgcaggcaattagaaatgttgtttgtctt |
404 |
Q |
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| T |
39792332 |
ttacaaatataccctgttgtattgtacataagcaccatttttattgaattatttatgcttatcacacattatgcaggcaattagaaatgttgtttgtctt |
39792233 |
T |
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| Q |
405 |
attatagtgca |
415 |
Q |
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| T |
39792232 |
attatagtgca |
39792222 |
T |
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