View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8390_low_8 (Length: 367)

Name: NF8390_low_8
Description: NF8390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8390_low_8
NF8390_low_8
[»] chr4 (4 HSPs)
chr4 (17-121)||(45644684-45644788)
chr4 (266-348)||(45644907-45644989)
chr4 (175-239)||(45644842-45644906)
chr4 (190-262)||(1389917-1389989)
[»] chr5 (3 HSPs)
chr5 (186-347)||(34645632-34645793)
chr5 (186-347)||(34665326-34665487)
chr5 (188-344)||(19649755-19649911)
[»] chr6 (1 HSPs)
chr6 (187-347)||(34302291-34302451)
[»] chr8 (4 HSPs)
chr8 (186-347)||(14182577-14182738)
chr8 (186-347)||(14191517-14191678)
chr8 (186-343)||(40717336-40717493)
chr8 (212-347)||(14200557-14200692)


Alignment Details
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 45644684 - 45644788
Alignment:
Q  17 tgtaagagtctataaaaaggcactaaagaacgtacaagttgtaacaaaatttcacttgaaagcgaaacgtctccgtatttctttctgatagcaacaatga 116  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  45644684 tgtaagagtctataaaaaggcactaaagaatgtacaagttgtaacaaaatttcacttgaaagcgaaacctctccgtatttctttctgatagcaacaatga 45644783  T
Q  117 acaca 121  Q
    |||||    
T  45644784 acaca 45644788  T

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Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 266 - 348
Target Start/End: Original strand, 45644907 - 45644989
Alignment:
Q  266 ttgtcaatgcagcacatcgttccatcattcgtgccaatcatttctataaaaattctctcgcaagtacacctgaatcaactgtg 348  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45644907 ttgtcaatgcagcacatcgttccatcattcgtgtcaatcatttctataaaaattctctcgcaagtacacctgaatcaactgtg 45644989  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 45644842 - 45644906
Alignment:
Q  175 ccatgctgtggtggttttagtgttgaacttattcactgcgactcctcaaaatcaccactctacaa 239  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  45644842 ccatgctgtggtggttttagtgttgaacttattcaccgcgactcctcaaaatcaccactctacaa 45644906  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 190 - 262
Target Start/End: Original strand, 1389917 - 1389989
Alignment:
Q  190 tttagtgttgaacttattcactgcgactcctcaaaatcaccactctacaaacctacacaaaataaataccaac 262  Q
    |||||||||||||| || ||| | ||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  1389917 tttagtgttgaactcatccaccgtgactcttcaaaatcaccactctaccaacctacacaaaataaataccaac 1389989  T

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Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 186 - 347
Target Start/End: Original strand, 34645632 - 34645793
Alignment:
Q  186 tggttttagtgttgaacttattcactgcgactcctcaaaatcaccactctacaaacctacacaaaataaataccaacacgttgtcaatgcagcacatcgt 285  Q
    |||||||||||||||||| || ||| | |||||| |||||||||||  ||||||||||||  ||||||||||||||||| ||||| ||||||||| ||||    
T  34645632 tggttttagtgttgaactcatccaccgtgactccccaaaatcaccatactacaaacctaccgaaaataaataccaacactttgtcgatgcagcacgtcgt 34645731  T
Q  286 tccatcattcgtgccaatcatttctataaaaattctctcgcaagtacacctgaatcaactgt 347  Q
    ||||||| ||||||||||||||||| |||| |||||  | ||||||||||||||||||||||    
T  34645732 tccatcaatcgtgccaatcatttctttaaagattctgacacaagtacacctgaatcaactgt 34645793  T

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Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 186 - 347
Target Start/End: Original strand, 34665326 - 34665487
Alignment:
Q  186 tggttttagtgttgaacttattcactgcgactcctcaaaatcaccactctacaaacctacacaaaataaataccaacacgttgtcaatgcagcacatcgt 285  Q
    |||||||||||||||||| || ||| | |||||| |||||||||||  ||||||||||||  ||||||||||||||||| ||||| ||||||||| ||||    
T  34665326 tggttttagtgttgaactcatccaccgtgactccccaaaatcaccatactacaaacctaccgaaaataaataccaacactttgtcgatgcagcacgtcgt 34665425  T
Q  286 tccatcattcgtgccaatcatttctataaaaattctctcgcaagtacacctgaatcaactgt 347  Q
    ||||||| ||||||||||||||||| |||| |||||  | ||||||||||||||||||||||    
T  34665426 tccatcaatcgtgccaatcatttctttaaagattctgacacaagtacacctgaatcaactgt 34665487  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 188 - 344
Target Start/End: Complemental strand, 19649911 - 19649755
Alignment:
Q  188 gttttagtgttgaacttattcactgcgactcctcaaaatcaccactctacaaacctacacaaaataaataccaacacgttgtcaatgcagcacatcgttc 287  Q
    |||||||| ||||||| || ||| |||| || |||||||||||||||||||||||| ||||||| |||| ||| || ||||||||||| |||| ||| ||    
T  19649911 gttttagttttgaactcatccaccgcgattcttcaaaatcaccactctacaaacctgcacaaaacaaattccagcatgttgtcaatgctgcacgtcggtc 19649812  T
Q  288 catcattcgtgccaatcatttctataaaaattctctcgcaagtacacctgaatcaac 344  Q
    ||||| ||||||||||| ||| | |||| |||| ||| | | |||||||||||||||    
T  19649811 catcaatcgtgccaatcgtttatttaaagattccctctccaatacacctgaatcaac 19649755  T

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Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 187 - 347
Target Start/End: Original strand, 34302291 - 34302451
Alignment:
Q  187 ggttttagtgttgaacttattcactgcgactcctcaaaatcaccactctacaaacctacacaaaataaataccaacacgttgtcaatgcagcacatcgtt 286  Q
    ||||||||| |||||||||| ||| | |||||||||||||||||  ||||||||||||||||||| ||||||||||| |||||| |||||| ||||||||    
T  34302291 ggttttagtattgaacttatacaccgtgactcctcaaaatcacctttctacaaacctacacaaaacaaataccaacatgttgtcgatgcagtacatcgtt 34302390  T
Q  287 ccatcattcgtgccaatcatttctataaaaattctctcgcaagtacacctgaatcaactgt 347  Q
    | |||| ||||| |||||| |   | ||||||||||| |||||||||||||||||||||||    
T  34302391 cgatcaatcgtgtcaatcactctaacaaaaattctcttgcaagtacacctgaatcaactgt 34302451  T

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Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 186 - 347
Target Start/End: Original strand, 14182577 - 14182738
Alignment:
Q  186 tggttttagtgttgaacttattcactgcgactcctcaaaatcaccactctacaaacctacacaaaataaataccaacacgttgtcaatgcagcacatcgt 285  Q
    |||||||||||||||||| || ||| |||||||||||||||||||||| ||| ||||||||||||| |||||||||||  |||||||||| ||||  |||    
T  14182577 tggttttagtgttgaactcatccaccgcgactcctcaaaatcaccactataccaacctacacaaaacaaataccaacatattgtcaatgccgcacgccgt 14182676  T
Q  286 tccatcattcgtgccaatcatttctataaaaattctctcgcaagtacacctgaatcaactgt 347  Q
    || |||| |||||||||||||||||| |||| | | ||| |||  |||||| ||||||||||    
T  14182677 tctatcaatcgtgccaatcatttctacaaaactgccctcacaaacacacctcaatcaactgt 14182738  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 186 - 347
Target Start/End: Original strand, 14191517 - 14191678
Alignment:
Q  186 tggttttagtgttgaacttattcactgcgactcctcaaaatcaccactctacaaacctacacaaaataaataccaacacgttgtcaatgcagcacatcgt 285  Q
    |||||||||||||||||| || ||| ||||||| | ||||||||||||||| |||||||| ||||||||||||||| |  ||||| |||| |||| ||||    
T  14191517 tggttttagtgttgaactcatccaccgcgactctttaaaatcaccactctataaacctactcaaaataaataccaatattttgtcgatgccgcacgtcgt 14191616  T
Q  286 tccatcattcgtgccaatcatttctataaaaattctctcgcaagtacacctgaatcaactgt 347  Q
    |||||||  |||||||||||||| || ||| |||| || |||| || |||| ||||||||||    
T  14191617 tccatcaaccgtgccaatcatttttacaaatattcccttgcaaatatacctcaatcaactgt 14191678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 186 - 343
Target Start/End: Original strand, 40717336 - 40717493
Alignment:
Q  186 tggttttagtgttgaacttattcactgcgactcctcaaaatcaccactctacaaacctacacaaaataaataccaacacgttgtcaatgcagcacatcgt 285  Q
    ||||||||| ||||||||||| ||| ||||||| |||||||||||| ||||| ||||||||||||| || |||||| | ||||| ||||| |||| ||||    
T  40717336 tggttttagcgttgaacttatccaccgcgactcttcaaaatcaccattctaccaacctacacaaaacaagtaccaaaaagttgtgaatgccgcacgtcgt 40717435  T
Q  286 tccatcattcgtgccaatcatttctataaaaattctctcgcaagtacacctgaatcaa 343  Q
    || ||||  ||||| ||||||||||| |||||||| ||  ||||| ||||||||||||    
T  40717436 tctatcaaccgtgctaatcatttctacaaaaattcacttacaagttcacctgaatcaa 40717493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 212 - 347
Target Start/End: Original strand, 14200557 - 14200692
Alignment:
Q  212 gcgactcctcaaaatcaccactctacaaacctacacaaaataaataccaacacgttgtcaatgcagcacatcgttccatcattcgtgccaatcatttcta 311  Q
    ||||||| |||||||||||| ||||| ||||||||||||| |||||| ||| | ||| |||||| |  | |||||||||||  |||| ||| ||||||||    
T  14200557 gcgactcttcaaaatcaccattctaccaacctacacaaaacaaatacgaacgcattgccaatgcggtgcgtcgttccatcaaccgtgtcaaccatttcta 14200656  T
Q  312 taaaaattctctcgcaagtacacctgaatcaactgt 347  Q
     ||| |||||||| | ||||||||| ||||||||||    
T  14200657 caaatattctctcactagtacacctcaatcaactgt 14200692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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