View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8390_low_9 (Length: 362)
Name: NF8390_low_9
Description: NF8390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8390_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 53493293 - 53493647
Alignment:
| Q |
1 |
tttaaatattagtataagagcagagagagtatatcgtcaaagatatagagaacaaaatataaaatattttctaggggagaacaataaatattgtattgct |
100 |
Q |
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| T |
53493293 |
tttaaatattagtataagagcagagagagtatatcgtcaaagatatagagaacaaaatataaaatattttctaggggagaacaataaatattgtattgct |
53493392 |
T |
|
| Q |
101 |
tagtttcctgaagctatagtacgcgagacactaaataaaatcatataaatgatcactcttttctcaattttatcaagaataataataaaagtgtattaag |
200 |
Q |
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| T |
53493393 |
tagtttcctgaagctatagtacgcgagacactaaataaaatcatataaatgatcactcttttctcaattttatcaagaataataataaaagtgtattaag |
53493492 |
T |
|
| Q |
201 |
tctgactatctatacttggatttctaattctcttaatattgcagagtttgaattagaagaccaaagaacataattcttgctgttggaatgacaaattacg |
300 |
Q |
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| T |
53493493 |
tctgactatctatacttggatttctaattctcttaatattgcagagtttgaattagaagaccaaagaacataattcttgctgttggaatgacaaattacg |
53493592 |
T |
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| Q |
301 |
ttcaactctccattcaaaaattaagtgtagtgattgttctatcttttcatctcac |
355 |
Q |
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| T |
53493593 |
ttcaactgtccattcacaaattaagtgtagtgattgttctatcttttcatctcac |
53493647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 6 - 296
Target Start/End: Original strand, 16072461 - 16072748
Alignment:
| Q |
6 |
atattagtataagagcagagagagtatatcgtcaaagatatagagaacaaaatataaaatattttctaggggagaacaataaatattgtattgcttagtt |
105 |
Q |
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| T |
16072461 |
atattaatataagagtagagagagtttgttgtcaaaaa-atagagaacaaaa-acaaaatattgtgtggacgagaacaataaataatgtattgcttagtt |
16072558 |
T |
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| Q |
106 |
tcctgaagctatagtacgcgagacactaaataaaatcatataaatgatcactcttttctcaattttatcaagaataataataaaagtgtatt--aagtct |
203 |
Q |
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| T |
16072559 |
tcctgaagctatagtacatgagacactaaataaaatcatataaatgatcactcttttctcaattttattgag---aatagtagaggtgtatttgttgtct |
16072655 |
T |
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| Q |
204 |
gactatctatacttggatttctaattctcttaatattgcagagtttgaattagaagaccaaagaacataattcttgctgttggaatgacaaat |
296 |
Q |
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|||||||||||||||||||||||| ||||| | | ||||| ||||| ||| ||||||||||||| || |||||||| ||||||| ||||||| |
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| T |
16072656 |
gactatctatacttggatttctaactctctcagtgttgcaaagtttaaatcagaagaccaaagatcaaaattcttgtggttggaaagacaaat |
16072748 |
T |
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