View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8391_high_10 (Length: 253)
Name: NF8391_high_10
Description: NF8391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8391_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 21 - 249
Target Start/End: Complemental strand, 30037075 - 30036846
Alignment:
| Q |
21 |
accgagactcaacttccttgataatttgatgtttgtgtggaatnnnnnnnntataaatgattatttttctttcgtaggtttattatcatgggatgctatg |
120 |
Q |
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| T |
30037075 |
accgagactcaacttccttgataatttgatgtttgtgtggaataaaaaaaatataaatgattatttttctttcgtaggtttattatcatgggatgctatg |
30036976 |
T |
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| Q |
121 |
ta-ttgtatttgaggcattttcaactacaactgtgatcacctctctaaatttggattcattttctattcatgacgttgtgagagattgatcactcctatt |
219 |
Q |
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|| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30036975 |
taattgtatttgaggcattttcaactaaaactgtgatcacctctctaagtttggattcattttctattcatgacgttgtgagagattgatcactcctatt |
30036876 |
T |
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| Q |
220 |
ataaatgatagagaaatgatatttgaacat |
249 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
30036875 |
ataaatgatagagaaatgatatttgaacat |
30036846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 22 - 253
Target Start/End: Complemental strand, 30152809 - 30152578
Alignment:
| Q |
22 |
ccgagactcaacttccttgataatttgatgtttgtgtggaatnnnnnnnntataaatgattatttttctttcgtaggtttattatcatgggatgctatgt |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30152809 |
ccgagactcaacttccttgataatttgatgtttgtgtggaataaaaaaaatataaatgattatttttctttcgtaggtttattatcatgggatgctatgt |
30152710 |
T |
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| Q |
122 |
at-tgtatttgaggcattttcaactacaactgtgatcacctctctaaatttggattcattttctattcatgacgttgtgagagattgatcactcctatta |
220 |
Q |
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| ||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30152709 |
aactgtatttgaggcattttcaactaaaactgtgatcacctctataagtttggattcattttctattcatgacgttgtgagagattgatcactcctatta |
30152610 |
T |
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| Q |
221 |
taaatgatagagaaatgatatttgaacattcat |
253 |
Q |
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|||||||||| ||||||||||||||||||||| |
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| T |
30152609 |
-aaatgatagaaaaatgatatttgaacattcat |
30152578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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