View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8391_high_11 (Length: 241)
Name: NF8391_high_11
Description: NF8391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8391_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 47589607 - 47589770
Alignment:
| Q |
20 |
gcttcgtcaattttgtaaacactaaagcagaaaacgatggcctgcttttcatgtcttgctcagacaacaaaaccactccaaatagcgctttccaattgaa |
119 |
Q |
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| T |
47589607 |
gcttcgtcaattttgtaaccactaaagcagaaaacgatggcctgcttttcatgtcttgctcagacaacaaaaccactccaaatagcgctttccaattgaa |
47589706 |
T |
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| Q |
120 |
tctcaggaccctcctattagatttatcttcaaacgccactgccaacaaagaattctacaacact |
183 |
Q |
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| T |
47589707 |
tctcaggaccctcctattagatttatcttcaaacgccactgccaacaaagaattctacaacact |
47589770 |
T |
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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 47589789 - 47589837
Alignment:
| Q |
180 |
cactcctccaacacagtctatggcttgtttatgtgtaagggtgatgtcc |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47589789 |
cactcctccaacacagtctatggcttgtttatgtgtaagggtgatgtcc |
47589837 |
T |
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