View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8391_high_3 (Length: 433)
Name: NF8391_high_3
Description: NF8391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8391_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 7067775 - 7067361
Alignment:
| Q |
1 |
acgatgtctgaaagctttacatcatcctttcataccctgcaaatctaacaggtacatatatatcatatatctgttgtatctacatgtatatattaatcaa |
100 |
Q |
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| T |
7067775 |
acgatgtctgaaagctttacatcatcctttcataccctgcaaatctaacaggtacatatat--catatatctgttgtatctacatgtatatattaatcaa |
7067678 |
T |
|
| Q |
101 |
acacacacagatccatcatcaattt-agcaaacttgaaaatgattgatgaaaacnnnnnnnntcaccatttttctatttcttcacttaatttctactatg |
199 |
Q |
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| T |
7067677 |
acacacacagatccatcatcaattttagcaaacttgaaaatgattgatgaaaacaaaaaaaatcaccatttttctatttcttcacttaatttctactagg |
7067578 |
T |
|
| Q |
200 |
ct-acctagctagctagctatacatatttaattatttatctttacactatttttggattttgttacttttctgtcctatgaatattaatgttaattgaat |
298 |
Q |
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| T |
7067577 |
cttacctagctagctagctatacatatttaattatttatctttacactatttttggattttgttacttttctgtcctatgaatattaatgataattgaat |
7067478 |
T |
|
| Q |
299 |
tattggacagtggtgtatatatataaaataaggtgtgaataactataaggaggtggtggtagttgctgagaaaggaagatgattttaacatgggagtagc |
398 |
Q |
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| T |
7067477 |
tattggacagtggtgtatatatataaaataaggtgtgaataactataaggaggtggtggtagttgctgagaaaggaagatgattttaacatgggagtagc |
7067378 |
T |
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| Q |
399 |
atcaccagtaccatttc |
415 |
Q |
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| T |
7067377 |
atcaccagtaccatttc |
7067361 |
T |
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