View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8391_high_7 (Length: 274)
Name: NF8391_high_7
Description: NF8391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8391_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 11 - 172
Target Start/End: Original strand, 2480513 - 2480674
Alignment:
| Q |
11 |
tttggtgttagggaattggcatcttcagtttgatcctttggtatagggaaattggttttggcattttttccattcatcaatatggctgcttgatcatatg |
110 |
Q |
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| T |
2480513 |
tttggtgttagggaattggcatcttcagtttgatcctttggtatagggaaattggttttggcattttttccattcatcaatatggccgcttgatcatatg |
2480612 |
T |
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| Q |
111 |
ctctggctgcagcctctgctgtctcaaatgtacctagccatacccttctcttcctgtgtaaa |
172 |
Q |
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| T |
2480613 |
ctctggctgcagcctctgctgtctcaaatgtacctagccatacccttctcttcctgtgtaaa |
2480674 |
T |
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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 165
Target Start/End: Original strand, 47101311 - 47101420
Alignment:
| Q |
56 |
gggaaattggttttggcattttttccattcatcaatatggctgcttgatcatatgctctggctgcagcctctgctgtctcaaatgtacctagccataccc |
155 |
Q |
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| T |
47101311 |
gggaaatttgttttggcatttctaccactcattaaaatcgcagcttgatcatatgctcttgctgcttcttctgctgtttcaaatgttcctagccacaccc |
47101410 |
T |
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| Q |
156 |
ttctcttcct |
165 |
Q |
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| T |
47101411 |
ttctcttcct |
47101420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 165
Target Start/End: Original strand, 2428636 - 2428746
Alignment:
| Q |
55 |
agggaaattggttttggcattttttccattcatcaatatggctgcttgatcatatgctctggctgcagcctctgctgtctcaaatgtacctagccatacc |
154 |
Q |
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| T |
2428636 |
agggaaatttgtttttgcatttcttccactcattagaatggctgcttcatcatatgctctagctgcttcttcagctgtctcaaatgttcctaaccaaacc |
2428735 |
T |
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| Q |
155 |
cttctcttcct |
165 |
Q |
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| T |
2428736 |
ctccttttcct |
2428746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 1726313 - 1726243
Alignment:
| Q |
95 |
gctgcttgatcatatgctctggctgcagcctctgctgtctcaaatgtacctagccatacccttctcttcct |
165 |
Q |
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| T |
1726313 |
gctgcttcatcatatgctcttgctgcatcttctgctgtttcaaatgttcctaaccatattcttgtcttcct |
1726243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 167
Target Start/End: Complemental strand, 49532676 - 49532564
Alignment:
| Q |
55 |
agggaaattggttttggcattttttccattcatcaatatggctgcttgatcatatgctctggctgcagcctctgctgtctcaaatgtacctagccatacc |
154 |
Q |
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| T |
49532676 |
agggaaattagtctttgcactttgaccattcatcaaaattgcagcttgatcatatgctcttgctgctgcttctgccgtctcaaatgttcctaaccacacc |
49532577 |
T |
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| Q |
155 |
cttctcttcctgt |
167 |
Q |
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|||||||| |||| |
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| T |
49532576 |
cttctctttctgt |
49532564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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