View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8391_high_8 (Length: 258)
Name: NF8391_high_8
Description: NF8391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8391_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 6454362 - 6454134
Alignment:
| Q |
8 |
attatactccatctataaatacaacatgccttcctcataaacctcatcaagcttctttctctactctactacatcaaatattaagtgttaatttgttgat |
107 |
Q |
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| T |
6454362 |
attatattccatctataaataca---tgacttcctcataaacctcatcaagcttctttctctactctactacatcaaatattaagtgttaatttgttgat |
6454266 |
T |
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| Q |
108 |
acataaagagttagcaaacatgtttggtatctttgacaagggccaaaaaatcaaggggactgtggtgttgatgcccaaaaatgttttggacttcaacgcc |
207 |
Q |
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| T |
6454265 |
acataaagagttagcaaacatgtttggcatctttgacaagggccaaaaaatcaaggggactgtggtgttgatgcccaaaaatgttttggacttcaacgcc |
6454166 |
T |
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| Q |
208 |
ataacgtccatcggtaaaggcggtgtcctcga |
239 |
Q |
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| T |
6454165 |
ataacgtccatcggtaaaggcggtgtcctcga |
6454134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 55 - 233
Target Start/End: Complemental strand, 6459450 - 6459271
Alignment:
| Q |
55 |
caagcttctttctctactctactacatcaaatattaagtgttaatttgtt-gatacataaagagttagcaaacatgtttggtatctt---tgacaagggc |
150 |
Q |
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| T |
6459450 |
caagcttcgttctctact--actacattaaatatctagtgttaatttgtttgataaa-aaagagttagcaaatatgtttggcatcttaaacaacaagggc |
6459354 |
T |
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| Q |
151 |
caaaaaatcaaggggactgtggtgttgatgcccaaaaatgttttggacttcaacgccataacgtccatcggtaaaggcggtgt |
233 |
Q |
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| T |
6459353 |
caaaaaatcaagggaactgtggtgttgatgcccaaaaatgttttggacttcaatgccataacttccgtcggtaaaggcggtgt |
6459271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 9600708 - 9600774
Alignment:
| Q |
149 |
gccaaaaaatcaaggggactgtggtgttgatgcccaaaaatgttttggacttcaacgccataacgtc |
215 |
Q |
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| T |
9600708 |
gccaaaagatcaagggcactgtggtgttgatgcccaaaaatgttttggacttcaacgccgtaacgtc |
9600774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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