View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8391_low_1 (Length: 609)
Name: NF8391_low_1
Description: NF8391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8391_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 3 - 524
Target Start/End: Complemental strand, 25146339 - 25145818
Alignment:
| Q |
3 |
agatggacatcatcatcaactctcttattagggcaaacagttattctaattatacaaaacctataataagaaactaggcaccaaaggtgattggtaggtt |
102 |
Q |
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| T |
25146339 |
agatgaacatcatcatcaactctcttattagggcaaacagttattctaattatacaaaacctataataagaaactaggcaccaaaggtgattggtaggtt |
25146240 |
T |
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| Q |
103 |
gcttcagccagctgactccaagaaaggttccaggtttggttgctgaattccgaggtagtggatgatcccagttcaaaacctgtaggaaaaacattctcat |
202 |
Q |
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| T |
25146239 |
gcttcagccagctgactccaagaaaggttccaggtttggttgctgaattccgaggtagtggatgatcccagttcaaaacctgtaggaaaaacattctcat |
25146140 |
T |
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| Q |
203 |
ttgagacctttttctttttcgctgttcgctgttcttcgtcggattgtgttttaaaggattcagattcctcggaaagagagggcaaaggggttgctttacc |
302 |
Q |
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| T |
25146139 |
ttgtgacctttttctttttcgctgttcgatgttcttcgtcggattgtgttttaaaggattcagattcctcggaaagagagggcaaaggggttgctttacc |
25146040 |
T |
|
| Q |
303 |
gacaaaaggcttgcaagcttttcttgttatatttctgatttgattactttgtccaattctggctagatactttccttgtggttcaattttcagcttccag |
402 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| || |
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| T |
25146039 |
aacaaaaggcttgcaagcttttcttgtaattgttctgatttgattactttgtccaattctggctagatactttccttgtgcttcaatcttcagcttcaag |
25145940 |
T |
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| Q |
403 |
ctttttggaaccttcaaccaagtaatacaaaattttaaagtctctctatcatgttttctcctctaagaaattatacatgttctccatttttcattggtta |
502 |
Q |
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| T |
25145939 |
ctttttggaaccttcaaccaaataatacaaaattttaacgtctctctatcatgttttctcctctaagaaattatacatgttctccatttttcattggtta |
25145840 |
T |
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| Q |
503 |
gagtaccttatataagaaataa |
524 |
Q |
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| T |
25145839 |
gagtaccttatataagaaataa |
25145818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 547 - 589
Target Start/End: Complemental strand, 25145797 - 25145755
Alignment:
| Q |
547 |
aattccctttaaaactttctacaattcttgacctaaaagttat |
589 |
Q |
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| T |
25145797 |
aattccctttaaaactttctacaattcttgacctaaaagttat |
25145755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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