View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8391_low_2 (Length: 557)
Name: NF8391_low_2
Description: NF8391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8391_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 18 - 544
Target Start/End: Original strand, 17725994 - 17726520
Alignment:
| Q |
18 |
atcaaattacagaacctgtcaatatattccaagttgagaaaagcatcaaccggtccttcagcttctgacttggtcctcacggttccaccaaaaaacggag |
117 |
Q |
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| T |
17725994 |
atcaaattacagaacctgtcaatatattccaagttgagaaaagcatcaaccggtccttcagcttctgacttggtcctcacggttccaccaataaacggtg |
17726093 |
T |
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| Q |
118 |
ccaacaaaacataacccctaaccctaaccggtgccaactcaaccgaaccaaacccaagccgaaccgccaaattatgagctatattaccaccagccgagtc |
217 |
Q |
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| T |
17726094 |
ccaacaaaacataacccctaacccgaaccggtgccaactcaaccgaaccaaacccaagccgaaccgccaaattatgagctatattaccaccagccgagtc |
17726193 |
T |
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| Q |
218 |
acccgaaataaaaacccggttaaaatcagccacatggctcaaccatggatccatctcactcctcaaagcttcttcttgaagccacttaacagccatgaaa |
317 |
Q |
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| T |
17726194 |
acccgaaataaaaacccggttaaaatcagccacatggctcaaccaaggatccatctcactcttcaaagcttcttcttgaagccacttaacagccatgaaa |
17726293 |
T |
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| Q |
318 |
ccatcttcaatagcacatggaagcctattctccggtgcaagtcgatagtcaggtgcaacaactactgcttcaagctcagaaacgagcttgaagcagtagt |
417 |
Q |
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| T |
17726294 |
ccatcttcaatagcacatggaagcctattctccggtgcaagtcgatagtcaggcgcaacaactactgcttcaagctcagaagcgagcttgaagcagtagt |
17726393 |
T |
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| Q |
418 |
tttgacaatttggccatgttcgtgacccgatgcagaagccgccgccgtgaatatagtaaaagattggtagctttttggagggtgatgagttagctggcct |
517 |
Q |
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| T |
17726394 |
tttgacaatttggccatgttcgtgatccgatgcagaagccgccaccgtgaatgtagtaaaagattggtagctttttggagggtgatgagttagctggctt |
17726493 |
T |
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| Q |
518 |
atagagtcgaaggtgaagattgtgtgt |
544 |
Q |
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| T |
17726494 |
atagagtcgaaggtgaagattgtgtgt |
17726520 |
T |
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