View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8391_low_3 (Length: 527)
Name: NF8391_low_3
Description: NF8391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8391_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 28 - 398
Target Start/End: Complemental strand, 991244 - 990874
Alignment:
| Q |
28 |
tgtaactattagagggcataaagtaagaacaaattccggaatgaacatatccatgaatcaatttaggttacatacatctgctacttccattgcttcatcc |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
991244 |
tgtaactattagagggcataaagtaagaacaaattccggaatgaacatatccatgaatcaatttaggttacatacatctgctacttccattgcttcatcc |
991145 |
T |
|
| Q |
128 |
tcactaatgccatgctcttttaactcaagaacccttaaggcaaataatcgagacggagcaggatcgatagcagaaaacctgttgaacttaaacattatga |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
991144 |
tcactaatgccatgctcttttaactcaagaacccttaatgcaaataatcgagacggagcaggatcgatagcagaaaacctgttgaacttaaacattatga |
991045 |
T |
|
| Q |
228 |
ccacaaacaagtagacatgaactgtagctaatttaatagtcctcctgatgcagatggaagcatctagaaaaaagactaccacgcactatgcatcttgtgt |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
991044 |
ccacaaacaagtagacatgaactgtagctaatttaatagtccttctgatgcagatggaagcatctagaaaaaagactaccacacactatgcatcttgtgt |
990945 |
T |
|
| Q |
328 |
atgcctgcatcatcaatttgtaacaactataccattgaggaattcctagtgaattgataaaaccagcttat |
398 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
990944 |
atgcctgcatcatcaatttgtaacaactattccattgaggaattcctagtgaattgataaaaccagcttat |
990874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 435 - 508
Target Start/End: Complemental strand, 990863 - 990790
Alignment:
| Q |
435 |
gttttaagaaaccaagtaaatcacataatagttggaggaaaaagaacagctgaggaccacaaaaccatcaacag |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
990863 |
gttttaagaaaccaagtaaatcacataatagttggaggaaaaagaacagctgaggagcacaaaaccatcaacag |
990790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 28 - 398
Target Start/End: Complemental strand, 36933978 - 36933620
Alignment:
| Q |
28 |
tgtaactattagagggcataaagtaagaacaaattccggaatgaacatatccatgaatcaatttaggttacatacatctgctacttccattgcttcatcc |
127 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36933978 |
tgtaactattagagggcaaaaagtaagaacaaattgcggaatgaacatattcatgaatcaatttaggttacatacatctgctacttccattgcttcattc |
36933879 |
T |
|
| Q |
128 |
tcactaatgccatgctcttttaactcaagaacccttaaggcaaataatcgagacggagcaggatcgatagcagaaaacctgttgaactt-aaacattatg |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| | | |
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| T |
36933878 |
tcactaatgccatgctcttttaactcaagaacccttaaggcgaataatcgagacggagcaggatcgatagcagaaaacctgttgaacttgaaacatgagg |
36933779 |
T |
|
| Q |
227 |
accacaaacaagtagacatgaactgtagctaatttaatagtcctcctgatgcagatggaagcatctagaaaaaagactaccacgcactatgcatcttgtg |
326 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
36933778 |
accacaaacaagtagacatgaactgtaactaatttaatagtccttctgatgcagatggaagcatctagaaaaaagactaccacacac------------- |
36933692 |
T |
|
| Q |
327 |
tatgcctgcatcatcaatttgtaacaactataccattgaggaattcctagtgaattgataaaaccagcttat |
398 |
Q |
| |
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|||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
36933691 |
tatgcctgcaccatcaatttgtaacaactattccatcgaggaattcctagtgaattgataaaaccagcttat |
36933620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 435 - 506
Target Start/End: Complemental strand, 36933570 - 36933499
Alignment:
| Q |
435 |
gttttaagaaaccaagtaaatcacataatagttggaggaaaaagaacagctgaggaccacaaaaccatcaac |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||| |
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| T |
36933570 |
gttttaagaaaccaagtaaatcacataatagtttgtggaaagagaacagctgaggaccacaaaaccatcaac |
36933499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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