View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8391_low_5 (Length: 412)
Name: NF8391_low_5
Description: NF8391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8391_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 17 - 395
Target Start/End: Original strand, 10932546 - 10932924
Alignment:
| Q |
17 |
attaaagagaccaatgtggatattgatgttagtaacagccgtgaactggatcgcgtggttcccgttcttcttgttcgacactgactggatgggccgcgag |
116 |
Q |
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| T |
10932546 |
attaaagagaccaatgtggatattgatgttagtaacagccgtgaactggatcgcgtggttcccgttcttcttgttcgacactgactggatgggccgtgag |
10932645 |
T |
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| Q |
117 |
gtgtacggaggagtttcaggagagaaagcatatgatactggtgtgagagttggttctttgggacttatgcttaatgctgttgttcttggtttaatgtctt |
216 |
Q |
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| T |
10932646 |
gtgtacggaggagtttcaggagagaaagcatatgatactggtgtgagagttggttctttgggacttatgcttaatgctgttgttcttggtttaatgtctt |
10932745 |
T |
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| Q |
217 |
tggctgtggagccattggggaaattggttggaggaattaagaggctttggggaatagttaattttattttggctatttgtttggcaatgactgtcctcat |
316 |
Q |
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| T |
10932746 |
tggctgtggagccattggggaaattggttggaggaattaagaggctttggggaatagttaattttattttggctatttgtttggcaatgactgtcctcat |
10932845 |
T |
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| Q |
317 |
taccaagatagctgagcatgagcgtcatacgtccggtggtgcaaccatcggacatccttctgatggtatcaaggtcggg |
395 |
Q |
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| T |
10932846 |
taccaagatagctgagcatgagcgtcagacatccggtggtgcaaccatcggacatccttctgatggtatcaaggtcggg |
10932924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 15124891 - 15124854
Alignment:
| Q |
72 |
tggttcccgttcttcttgttcgacactgactggatggg |
109 |
Q |
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| T |
15124891 |
tggtttccgttcttcttgttcgacactgattggatggg |
15124854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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