View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8391_low_6 (Length: 390)
Name: NF8391_low_6
Description: NF8391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8391_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 373
Target Start/End: Complemental strand, 1912129 - 1911775
Alignment:
| Q |
11 |
tgagatgaacatctacataacaggtccatacaattccaaaacatgaaatacaaaacatcagaagaataaaattaatgaaacccctgtaactataactaac |
110 |
Q |
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| T |
1912129 |
tgagatgaacatctacataacaggtccatacaattccaaaacat--------------cagaagcataaaattaatgaaacccctgtaactataactaac |
1912044 |
T |
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| Q |
111 |
taacatcaagactagatataacaaagttactataata-----aggccttaacctatgaagcatggacacagacacggacaccaaacaacactatctcaga |
205 |
Q |
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| T |
1912043 |
taacatcaagactagatataacaaagttactataatacttgaaggccttaacctatgaagcatggacacaaacacggacaccaaacaacattgccataga |
1911944 |
T |
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| Q |
206 |
cacgttgacaccgataannnnnnn-gagaaaatgacataattcaacataggctttaacaaaatcatcctgaaattttggagagtttggtaacatctcaaa |
304 |
Q |
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| T |
1911943 |
cacgttgacaccgataattttttttgagaaaatgacataattcaacataggctttaacgaaatcatcctgacattttggagagtttggtaacatctcaaa |
1911844 |
T |
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| Q |
305 |
aaagtacagttttttagggaactcgggaaaagaacctgagttcgattgttggagccacctatttagaag |
373 |
Q |
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| T |
1911843 |
aaagtacagttttttagggaactcgggaaaagaacctgagttcgattgttggagccacctatttagaag |
1911775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 1896632 - 1896502
Alignment:
| Q |
11 |
tgagatgaacatctacataacaggtccatacaattccaaaacatgaaatacaaaacatcagaagaataaaattaatgaaacccctgtaactataactaac |
110 |
Q |
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| T |
1896632 |
tgagatgaacatctgcataacggtcccaaaaaattccaaaacatgaaacaaaaaccatcaaaagcatacaattaatgaca-ccctttgaccaaatcaaac |
1896534 |
T |
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| Q |
111 |
taacatcaagactagatataacaaagttacta |
142 |
Q |
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| T |
1896533 |
taacatcaatactagctataacaaaattacta |
1896502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 187
Target Start/End: Complemental strand, 26205875 - 26205846
Alignment:
| Q |
158 |
ctatgaagcatggacacagacacggacacc |
187 |
Q |
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| T |
26205875 |
ctatgaagcatggacacagacacggacacc |
26205846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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