View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8392_high_18 (Length: 216)
Name: NF8392_high_18
Description: NF8392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8392_high_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 200
Target Start/End: Complemental strand, 41448342 - 41448154
Alignment:
| Q |
12 |
agaagaacaagaatgagactaaacaaattgagactttcttttttgaattatttaacaatgtaacagagaaactatttgcttcttaattatgatgagcaaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41448342 |
agaagaacaagaatgagactaaacaaattgagactttattttttgaattatttaacaatgtaacagagaaactatttgcttcttaattatgatgagcaaa |
41448243 |
T |
|
| Q |
112 |
tgatttaatcaagtagattaattaaactcaccaaccactccctgtgaccttgtaagccatcttgatgaagtcttttgatagcaataaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41448242 |
tgatttaatcaagtagattaattaaactcaccaaccactccctgtgaccttgtaagccatcttgatgaagtcttttgatagcaataaca |
41448154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 78 - 200
Target Start/End: Complemental strand, 41458646 - 41458528
Alignment:
| Q |
78 |
agaaactatttgcttcttaattatgatgagcaaatgatttaatcaagtagattaattaaactcaccaaccactccctgtgaccttgtaagccatcttgat |
177 |
Q |
| |
|
||||||||| |||||||||||||| | |||||||||||||| |||||| |||||||| ||||||||||||||||||| | | |||| ||||||| |
|
|
| T |
41458646 |
agaaactatctgcttcttaattatcaaaagcaaatgatttaaacaagta----tattaaactaaccaaccactccctgtgacttcggaagctttcttgat |
41458551 |
T |
|
| Q |
178 |
gaagtcttttgatagcaataaca |
200 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
41458550 |
taaggcttttgatagcaataaca |
41458528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 41441814 - 41441747
Alignment:
| Q |
132 |
attaaactcaccaaccactccctgtgaccttgtaagccatcttgatgaagtcttttgatagcaataac |
199 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||| ||||||| ||||||||| | ||||||||| |
|
|
| T |
41441814 |
attaaactcaccaaccactccctgtgaccctggaagctttcttgattaagtcttttaacagcaataac |
41441747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University