View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8392_high_3 (Length: 348)
Name: NF8392_high_3
Description: NF8392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8392_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 337
Target Start/End: Original strand, 35989130 - 35989461
Alignment:
| Q |
17 |
atttaggacataattaatattaacaaagaactgaaaacacattttcatccaaaatcttaaatggtccttatataaccttgcaagtagtttggaagtgcaa |
116 |
Q |
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| T |
35989130 |
atttaggacataattaatattaacaaagaactgaaaacacattttcatccaaaatcttaaatggtccttatataaccttgcaagtagtttggaagtgcaa |
35989229 |
T |
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| Q |
117 |
gtatgaagtgataaagtttcacattggttaataatgagttaattgataataattatttgataaagtgctcac-nnnnnnntaaatttgaaaacacatttt |
215 |
Q |
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| T |
35989230 |
gtatgaagtgataaagtttcacattggttaataatgagttaagtgataataattatttgataaagtgctcacaaaaaaaataaatttgaaaacacatttt |
35989329 |
T |
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| Q |
216 |
cacaaggtttgcttggtgacagaatagaactaaactggaaataaccttgttgtgagttcgc----------ttgttgagaattcaaaccctcaaaatcaa |
305 |
Q |
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| T |
35989330 |
cacaaggtttgcttggtgacagaatagaactaaactggaaataaccttgttgtgagttcgcttgttgagaattgttgagaattcaaaccctcaaaatcaa |
35989429 |
T |
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| Q |
306 |
caagatgggtatgcttattcaatcccgtctct |
337 |
Q |
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| T |
35989430 |
caagactggtatgcttattcaatcccgtctct |
35989461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 35998710 - 35998668
Alignment:
| Q |
116 |
agtatgaagtgataaagtttcacattggttaataatgagttaa |
158 |
Q |
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| T |
35998710 |
agtatgaaatgataaagtttgacattggttaataatgagttaa |
35998668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 35983371 - 35983322
Alignment:
| Q |
120 |
tgaagtgataaagtttcacattggttaataatgagttaattgataataat |
169 |
Q |
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| T |
35983371 |
tgaagtgagaaagtttcacattggttaataatgatgtaagtgataataat |
35983322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 35993934 - 35993892
Alignment:
| Q |
116 |
agtatgaagtgataaagtttcacattggttaataatgagttaa |
158 |
Q |
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| T |
35993934 |
agtatgaaatgataaagtttgacattggttaataacgagttaa |
35993892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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