View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8392_high_5 (Length: 331)

Name: NF8392_high_5
Description: NF8392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8392_high_5
NF8392_high_5
[»] chr2 (1 HSPs)
chr2 (32-308)||(15551620-15551894)
[»] chr5 (4 HSPs)
chr5 (160-308)||(4219918-4220066)
chr5 (32-134)||(4219783-4219885)
chr5 (32-110)||(7349363-7349441)
chr5 (32-110)||(13814076-13814152)
[»] scaffold0168 (1 HSPs)
scaffold0168 (33-110)||(7634-7711)
[»] chr7 (2 HSPs)
chr7 (32-110)||(28584268-28584346)
chr7 (32-96)||(38161072-38161135)
[»] chr6 (1 HSPs)
chr6 (34-110)||(29033558-29033634)
[»] chr4 (3 HSPs)
chr4 (32-94)||(48713708-48713770)
chr4 (32-92)||(44892512-44892572)
chr4 (31-96)||(55191134-55191199)
[»] chr1 (1 HSPs)
chr1 (32-110)||(52268411-52268489)
[»] chr3 (5 HSPs)
chr3 (32-111)||(25612322-25612401)
chr3 (32-110)||(37220678-37220755)
chr3 (32-96)||(25420501-25420565)
chr3 (32-110)||(32697047-32697125)
chr3 (32-85)||(50116780-50116833)
[»] scaffold1585 (1 HSPs)
scaffold1585 (32-96)||(688-752)


Alignment Details
Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 32 - 308
Target Start/End: Original strand, 15551620 - 15551894
Alignment:
Q  32 cattttatcctccaaaagcgcatatgtggtagatttttaactgatgtggcaaataaaacacctatatggaactgcatattataaggactcattaaaaaat 131  Q
    ||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||| |||||| ||| | |||||||| ||||||||||||||||| |    
T  15551620 cattttatcctccaaaaacgcacatgtggcagatttttaactgatgtggcaaataaaatacctatgtggcattgcatattgtaaggactcattaaaaa-t 15551718  T
Q  132 atttaaannnnnnnnnnagnnnnnnnnncacatttaataataatttaagaattacaactttaacaaaattgaagattaaaaaatattacaaatgcatcca 231  Q
    |||||||          ||         | ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  15551719 atttaaaaatttttag-agaaaaaaaaacgcatttaataataatttaagaattacagttttaacaaaattgaagattaaaaaatattacaaatgcatcca 15551817  T
Q  232 tggaaattgtagtatcaaattnnnnnnnttgggtttccaaacaaaattaaaaatcctacaatattcatcttcttcaa 308  Q
    ||||||||||| |||||||||       || |||||||||| |||||||||||  |||||||||| |||||||||||    
T  15551818 tggaaattgtaatatcaaattaaaaaaattaggtttccaaataaaattaaaaactctacaatatttatcttcttcaa 15551894  T

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Target: chr5 (Bit Score: 116; Significance: 5e-59; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 160 - 308
Target Start/End: Original strand, 4219918 - 4220066
Alignment:
Q  160 cacatttaataataatttaagaattacaactttaacaaaattgaagattaaaaaatattacaaatgcatccatggaaattgtagtatcaaattnnnnnnn 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||           
T  4219918 cacatttaataataatttaagaattacaactttaacaaaattgaagattaaaaaatattacaaatgcatccatggaaattgtaatatcaaattaaaaaaa 4220017  T
Q  260 ttgggtttccaaacaaaattaaaaatcctacaatattcatcttcttcaa 308  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  4220018 ttgggtttccaaataaaataaaaaatcctacaatattcatcttcttcaa 4220066  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 32 - 134
Target Start/End: Original strand, 4219783 - 4219885
Alignment:
Q  32 cattttatcctccaaaagcgcatatgtggtagatttttaactgatgtggcaaataaaacacctatatggaactgcatattataaggactcattaaaaaat 131  Q
    |||||||||||||||||  |||||||||| ||||||||||||||||| ||||||||||||||||||||| || ||||||| |||||||||||||||||||    
T  4219783 cattttatcctccaaaaatgcatatgtggcagatttttaactgatgtagcaaataaaacacctatatgggacagcatattgtaaggactcattaaaaaat 4219882  T
Q  132 att 134  Q
    |||    
T  4219883 att 4219885  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 7349441 - 7349363
Alignment:
Q  32 cattttatcctccaaaagcgcatatgtggtagatttttaactgatgtggcaaataaaacacctatatggaactgcatat 110  Q
    |||||| |||||||||| |||| |||||  ||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  7349441 cattttttcctccaaaaacgcacatgtgtcagatttttaactgatgtggcaaataaaacacctatgtggcactgcatat 7349363  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 13814152 - 13814076
Alignment:
Q  32 cattttatcctccaaaagcgcatatgtggtagatttttaactgatgtggcaaataaaacacctatatggaactgcatat 110  Q
    ||||||||||||||||| |||| ||||  ||  |||||||||||||||||||||||||||||||| ||| |||||||||    
T  13814152 cattttatcctccaaaaacgcacatgtcata--tttttaactgatgtggcaaataaaacacctatgtggcactgcatat 13814076  T

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Target: scaffold0168 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 7711 - 7634
Alignment:
Q  33 attttatcctccaaaagcgcatatgtggtagatttttaactgatgtggcaaataaaacacctatatggaactgcatat 110  Q
    |||||||||||||||| |||| |||||  ||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  7711 attttatcctccaaaaacgcacatgtgtcagatttttaactgatgtggcaaataaaacacctatgtggcactgcatat 7634  T

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Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 28584346 - 28584268
Alignment:
Q  32 cattttatcctccaaaagcgcatatgtggtagatttttaactgatgtggcaaataaaacacctatatggaactgcatat 110  Q
    ||||||||||||||||| |||  |||||  |||||||||||||||||||||||| |||||||||| ||| |||||||||    
T  28584346 cattttatcctccaaaaacgccgatgtgtcagatttttaactgatgtggcaaatgaaacacctatgtggcactgcatat 28584268  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 38161072 - 38161135
Alignment:
Q  32 cattttatcctccaaaagcgcatatgtggtagatttttaactgatgtggcaaataaaacacctat 96  Q
    ||||||||||||||||| |||| |||||  ||||||||||||||||||||||| |||||||||||    
T  38161072 cattttatcctccaaaaacgcacatgtgtcagatttttaactgatgtggcaaa-aaaacacctat 38161135  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 29033558 - 29033634
Alignment:
Q  34 ttttatcctccaaaagcgcatatgtggtagatttttaactgatgtggcaaataaaacacctatatggaactgcatat 110  Q
    |||| |||||||||| |||| |||||  ||||||||||||||||||||||||||||||||||| ||| | |||||||    
T  29033558 ttttttcctccaaaaacgcacatgtgtcagatttttaactgatgtggcaaataaaacacctatgtggcattgcatat 29033634  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 48713770 - 48713708
Alignment:
Q  32 cattttatcctccaaaagcgcatatgtggtagatttttaactgatgtggcaaataaaacacct 94  Q
    ||||||||||||||||| |||| |||||  ||||||||||||||||||| ||| |||||||||    
T  48713770 cattttatcctccaaaaacgcacatgtgtcagatttttaactgatgtggtaaaaaaaacacct 48713708  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 44892572 - 44892512
Alignment:
Q  32 cattttatcctccaaaagcgcatatgtggtagatttttaactgatgtggcaaataaaacac 92  Q
    ||||||||||||||||| |||  || ||| ||| |||||||||||||||||||||||||||    
T  44892572 cattttatcctccaaaaacgctgatatggcagaattttaactgatgtggcaaataaaacac 44892512  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 55191199 - 55191134
Alignment:
Q  31 tcattttatcctccaaaagcgcatatgtggtagatttttaactgatgtggcaaataaaacacctat 96  Q
    ||||||||||||| ||||  ||  |||||  ||| |||||||||||||||| ||||||||||||||    
T  55191199 tcattttatcctctaaaaatgctgatgtgtcagaattttaactgatgtggccaataaaacacctat 55191134  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 52268411 - 52268489
Alignment:
Q  32 cattttatcctccaaaagcgcatatgtggtagatttttaactgatgtggcaaataaaacacctatatggaactgcatat 110  Q
    |||||| |||||||||| || | |||||  ||||||| ||||||||||||||||||||||| ||| ||| |||||||||    
T  52268411 cattttttcctccaaaaacggacatgtgtcagattttaaactgatgtggcaaataaaacacttatgtggcactgcatat 52268489  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 25612401 - 25612322
Alignment:
Q  32 cattttatcctccaaaagcgcatatgtggtagatttttaactgatgtggcaaataaaacacctatatggaactgcatatt 111  Q
    ||||||||||||||||| |||  |||||  | | |||||||||||||||| |||||||||||||| ||| | ||||||||    
T  25612401 cattttatcctccaaaaacgctgatgtgtcaaaattttaactgatgtggccaataaaacacctatgtggcaatgcatatt 25612322  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 37220678 - 37220755
Alignment:
Q  32 cattttatcctccaaaagcgcatatgtggtagatttttaactgatgtggcaaataaaacacctatatggaactgcatat 110  Q
    ||||||||||||||||| |||  |||||  ||| |||||| |||| ||||||||||||||||||||||| | |||||||    
T  37220678 cattttatcctccaaaaacgctgatgtgtcagaattttaattgat-tggcaaataaaacacctatatggcattgcatat 37220755  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 25420565 - 25420501
Alignment:
Q  32 cattttatcctccaaaagcgcatatgtggtagatttttaactgatgtggcaaataaaacacctat 96  Q
    ||||||||||| |||||  ||| ||||| |||| |||||||||||||||| |||| |||||||||    
T  25420565 cattttatccttcaaaaatgcagatgtgttagaattttaactgatgtggccaatagaacacctat 25420501  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 32697125 - 32697047
Alignment:
Q  32 cattttatcctccaaaagcgcatatgtggtagatttttaactgatgtggcaaataaaacacctatatggaactgcatat 110  Q
    ||||||||||||||||| ||   |||||  ||| |||||||||||||||| |||| ||||||||| ||| | |||||||    
T  32697125 cattttatcctccaaaaacgttgatgtgtcagaattttaactgatgtggccaatagaacacctatgtggcaatgcatat 32697047  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 50116833 - 50116780
Alignment:
Q  32 cattttatcctccaaaagcgcatatgtggtagatttttaactgatgtggcaaat 85  Q
    |||||| |||||||||| |||| |  ||| ||||||||||||||||||||||||    
T  50116833 cattttttcctccaaaaacgcacaaatggcagatttttaactgatgtggcaaat 50116780  T

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Target: scaffold1585 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1585
Description:

Target: scaffold1585; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 688 - 752
Alignment:
Q  32 cattttatcctccaaaagcgcatatgtggtagatttttaactgatgtggcaaataaaacacctat 96  Q
    ||||| ||||||||||| |||| ||||   |||||||||||||||||| |||| |||||||||||    
T  688 catttgatcctccaaaaacgcacatgtatcagatttttaactgatgtgacaaaaaaaacacctat 752  T

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