View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8392_low_1 (Length: 543)
Name: NF8392_low_1
Description: NF8392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8392_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 6 - 362
Target Start/End: Complemental strand, 28897105 - 28896753
Alignment:
| Q |
6 |
gagtagcagagaaaaagagaaaggtgagtcacaggattcacaatggagagtggttcagttaagagaaaaagtggtggtggtggtggaaacgcagtagagg |
105 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28897105 |
gagtagcaaagaaaaagagaaaggtgagtcacaggattcacaatggagagtggttcagttaagagaaaaagtggtggtggtggtggaaacgcagtagagg |
28897006 |
T |
|
| Q |
106 |
ttctagatggttctaatattatggagttagttggaaacaaagatgtttttagtaactttgtgaaccataagtttcaagagttggatagagataaagatgg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28897005 |
ttctagatggttctaatattatggagttagttggaaacaaagatgtttttagtaactttgtgaaccataagtttcaagagttggatagagataaagatgg |
28896906 |
T |
|
| Q |
206 |
taaactctctctgactgaacttcaacctgctgtttctgatattggtgctgctcttggtttacctgctaaaggcactaatcctgattctgatcacatctat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28896905 |
taaactctctctgactgaacttcaacctgctgtttctgatattggttctgctcttggtttacctgctaaaggcactaatcctgattctgatcacatctat |
28896806 |
T |
|
| Q |
306 |
tctgaggtattactcttcattaatattaattacaaccatttatgattatgtatgcat |
362 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
28896805 |
tctgaggtattactcttcattaat----attacaaccatttatgattatatatgcat |
28896753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 392 - 515
Target Start/End: Complemental strand, 28896750 - 28896627
Alignment:
| Q |
392 |
atatatagtgcaatattctatttacttctttgctatagtttgataaacatatgtttgaatttgccaacaaagtttgttctctaagataacaaagttttaa |
491 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28896750 |
atatatagtgtaatattctatttacttctttgctatagattgatacacatatgtttgaatttggcaacaaagtttgttctctaagataacaaagttttaa |
28896651 |
T |
|
| Q |
492 |
taattaattttagctaaacaagaa |
515 |
Q |
| |
|
|||||||||| ||||||||||||| |
|
|
| T |
28896650 |
taattaatttcagctaaacaagaa |
28896627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 234 - 304
Target Start/End: Original strand, 55095177 - 55095247
Alignment:
| Q |
234 |
gctgtttctgatattggtgctgctcttggtttacctgctaaaggcactaatcctgattctgatcacatcta |
304 |
Q |
| |
|
|||||| |||| || ||||||||||||||||| |||||| | ||||||| |||||| |||||||||||||| |
|
|
| T |
55095177 |
gctgttgctgacatcggtgctgctcttggtttgcctgctcagggcactactcctgactctgatcacatcta |
55095247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University