View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8392_low_17 (Length: 241)
Name: NF8392_low_17
Description: NF8392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8392_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 42600725 - 42600949
Alignment:
| Q |
1 |
tatgaaggtgagtgggttgatgttaacccggttcaaggtggtatcatcgttaatattggcgactttctccaggtatgtctttagaaattaaaaagtattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42600725 |
tatgaaggtgagtgggttgatgttaacccggttcaaggtggtatcatcgttaatattggcgactttctccaggtatgtctttagaaattaaaaagtactt |
42600824 |
T |
|
| Q |
101 |
ccttgagtcactattataaacaaaacttcactttttaaaaattatgtatctaagagtaaagatacatgg---tcatattgaatgatcggataatagatac |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| | ||| |||||||||||||||||||||||| |
|
|
| T |
42600825 |
ccttgagtcactattataaacaaaacttcactttttaaaaatta-gtatctaacagcaaagataccctgatatcacattgaatgatcggataatagatac |
42600923 |
T |
|
| Q |
198 |
atactctgttaaactccagatactag |
223 |
Q |
| |
|
|||||||||||||||| |||||||| |
|
|
| T |
42600924 |
atactctgttaaactctggatactag |
42600949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 139
Target Start/End: Original strand, 39396828 - 39396859
Alignment:
| Q |
108 |
tcactattataaacaaaacttcactttttaaa |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
39396828 |
tcactattataaacaaaacttcactttttaaa |
39396859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 33123017 - 33123049
Alignment:
| Q |
107 |
gtcactattataaacaaaacttcactttttaaa |
139 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
33123017 |
gtcattattataaacaaaacttcactttttaaa |
33123049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 26468300 - 26468332
Alignment:
| Q |
107 |
gtcactattataaacaaaacttcactttttaaa |
139 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
26468300 |
gtcactattataaacaaaatttcactttttaaa |
26468332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University