View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8392_low_2 (Length: 507)
Name: NF8392_low_2
Description: NF8392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8392_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 44647014 - 44646755
Alignment:
| Q |
1 |
tcctcacatatagatatggtaaaagtagcaagacgacaaagaaggatttatgacttcattatagatgtaagcatgttagacattatctttattaggtttc |
100 |
Q |
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| T |
44647014 |
tcctcacatatagatatggtaaaagtagcaagacgacaaagaaggatttatgacttcattatagatgtaagcatgttagacattatctttattaggtttc |
44646915 |
T |
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| Q |
101 |
tataataataagccatttttcttcttcactctattatgctgtggaggtgaaaatcggtttgtgaaaaacgtactcatttgatatgtgtgtgcaattgata |
200 |
Q |
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| T |
44646914 |
cataataataagccatttttcttcttcactctattatgctgtggaggtgaaaatcggtttgtgaaaaacgtactcatttgatatgtgtgtgcaaatgata |
44646815 |
T |
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| Q |
201 |
cttgacttggaacccttaaattagttacattcacaacttcaatttactttaactttatca |
260 |
Q |
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| T |
44646814 |
cttgacttggaacccttaaattagttacattcacaacttcaatttactttaactttatca |
44646755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 290 - 487
Target Start/End: Complemental strand, 44646753 - 44646556
Alignment:
| Q |
290 |
tatgtgtatgaaaaatgaaaaacctttatgtcataaacttctattatatgaaaaatcaaagatatatataatttcaatgactatgacatccctagaccac |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44646753 |
tatgtgtatgaaaaatgaaaaacctttatgtcataaacttctattatatgaaaaatcaaagatatatataatttcaatgactatgacatgcctagaccac |
44646654 |
T |
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| Q |
390 |
gttgttgatgtagcaatattgatcttaatataaacaaggcaatatggttcccacatttttcatcttttattgaacttggtcacacattgaatttatgg |
487 |
Q |
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| T |
44646653 |
gttgttgatgtagcaatattgatcttaatataaacaaggcaatatggttcccacatttttcatcttttattgaacttggtcacacattgaatttatgg |
44646556 |
T |
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