View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8392_low_3 (Length: 478)
Name: NF8392_low_3
Description: NF8392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8392_low_3 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 97 - 478
Target Start/End: Original strand, 53123366 - 53123747
Alignment:
| Q |
97 |
ttttgacataagtgcaaaatctgaggcacacaagtgaaatgaaaatattgaagacctttcataataccaagaagtttagttccatctgtatttgcctctt |
196 |
Q |
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| T |
53123366 |
ttttgacataagtgcaaaatctgaggcacacaagtgaaatgaaaatattgaagacctttcataataccaagaagttcagttccatctgtatttgcctctt |
53123465 |
T |
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| Q |
197 |
cactggttttggttttctcttatacgctggtgaattgctcccaaagggtattagccttttgagaccattttccagaatagttttgttttgtagtatccgg |
296 |
Q |
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| T |
53123466 |
cactggttttggttttctcttatacgctggtgaattgctcccaaagggtattagccttttgagaccattttccagaatagttttgttttgtagtatccgg |
53123565 |
T |
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| Q |
297 |
gttggatttgaaccaagcaaatggttttcgtttgttaaagctgtttgcagtgtctttgaggcaatttttgggaagaatagatactgaacagcacaacgaa |
396 |
Q |
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| T |
53123566 |
gttggattcgaaccaagcaaatggttttcgtttgttaaagctgtttgcagtgtctttgaggcaatttttgggaagaatagatactgaacagcacaacgaa |
53123665 |
T |
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| Q |
397 |
ccaccaatgtgaaagattacagaaccaattagtccagtgactgttcctaaaactatgctgagaatgatcttcccaggaccaa |
478 |
Q |
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| T |
53123666 |
ccaccaatgtgaaagattacagaaccaattagtccagtgactgttcctaaaactatgctgagaatgatcttcccaggaccaa |
53123747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 53123268 - 53123318
Alignment:
| Q |
1 |
aaaaaggcaattatagactgagaacttacactgcaattcttggtaactgtg |
51 |
Q |
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| T |
53123268 |
aaaaaggcaattatagactgagaacttacactgcaattcttggtaactgtg |
53123318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 6504682 - 6504730
Alignment:
| Q |
109 |
tgcaaaatctgaggcacacaagtgaaatgaaaatattgaagacctttca |
157 |
Q |
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| T |
6504682 |
tgcaaaatctgaggcacacaagtaaaatgaagatattgaagacctttca |
6504730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 298 - 364
Target Start/End: Original strand, 6505046 - 6505112
Alignment:
| Q |
298 |
ttggatttgaaccaagcaaatggttttcgtttgttaaagctgtttgcagtgtctttgaggcaatttt |
364 |
Q |
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| T |
6505046 |
ttggacttgaaccaagcatatggttttcttttgtcaaagctacttggagtgtctttgaggcaatttt |
6505112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 474
Target Start/End: Original strand, 6505155 - 6505254
Alignment:
| Q |
374 |
tagatactgaacagcacaacgaaccaccaatgtgaaagattacagaaccaattagtccagtgactgttcctaaaactatgctgagaatgatcttcccagg |
473 |
Q |
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||||||| |||| ||||||||| ||| |||| ||||| ||||||||||||| |||||| || | ||||||||||||||| | ||| ||||||| ||| |
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| T |
6505155 |
tagataccaaacaacacaacgaatcacgaatgc-aaagagaacagaaccaattaatccagtaacagctcctaaaactatgctaataataatcttcctagg |
6505253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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